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LINC00562 (long intergenic non-protein coding RNA 562)

Identity

Other alias-
HGNC (Hugo) LINC00562
LocusID (NCBI) 100861549
Atlas_Id 65498
Location 13q14.2  [Link to chromosome band 13q14]
Location_base_pair Starts at 48504288 and ends at 48506757 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC00562   43706
Cards
Entrez_Gene (NCBI)LINC00562  100861549  long intergenic non-protein coding RNA 562
Aliases
GeneCards (Weizmann)LINC00562
Ensembl hg19 (Hinxton)ENSG00000260388 [Gene_View]  chr13:48504288-48506757 [Contig_View]  LINC00562 [Vega]
Ensembl hg38 (Hinxton)ENSG00000260388 [Gene_View]  chr13:48504288-48506757 [Contig_View]  LINC00562 [Vega]
ICGC DataPortalENSG00000260388
TCGA cBioPortalLINC00562
AceView (NCBI)LINC00562
Genatlas (Paris)LINC00562
WikiGenes100861549
SOURCE (Princeton)LINC00562
Genetics Home Reference (NIH)LINC00562
Genomic and cartography
GoldenPath hg19 (UCSC)LINC00562  -     chr13:48504288-48506757 -  13q14.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)LINC00562  -     13q14.2   [Description]    (hg38-Dec_2013)
EnsemblLINC00562 - 13q14.2 [CytoView hg19]  LINC00562 - 13q14.2 [CytoView hg38]
Mapping of homologs : NCBILINC00562 [Mapview hg19]  LINC00562 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK123146 HG505627
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)NC_000013 NC_018924 NT_024524 NW_004929388
Consensus coding sequences : CCDS (NCBI)LINC00562
Cluster EST : UnigeneHs.660978 [ NCBI ]
CGAP (NCI)Hs.660978
Alternative Splicing GalleryENSG00000260388
Gene ExpressionLINC00562 [ NCBI-GEO ]   LINC00562 [ EBI - ARRAY_EXPRESS ]   LINC00562 [ SEEK ]   LINC00562 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC00562 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100861549
GTEX Portal (Tissue expression)LINC00562
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC00562
DMDM Disease mutations100861549
Blocks (Seattle)LINC00562
Human Protein AtlasENSG00000260388
Protein Interaction databases
FunCoupENSG00000260388
BioGRIDLINC00562
STRING (EMBL)LINC00562
ZODIACLINC00562
Ontologies - Pathways
Huge Navigator LINC00562 [HugePedia]
snp3D : Map Gene to Disease100861549
BioCentury BCIQLINC00562
ClinGenLINC00562
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100861549
Clinical trialLINC00562
Miscellaneous
canSAR (ICR)LINC00562 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC00562
EVEXLINC00562
GoPubMedLINC00562
iHOPLINC00562
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:11:59 CET 2017

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