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LINC00563 (long intergenic non-protein coding RNA 563)

Identity

Other alias-
HGNC (Hugo) LINC00563
LocusID (NCBI) 100861554
Atlas_Id 65499
Location 13q14.13  [Link to chromosome band 13q14]
Location_base_pair Starts at 46296445 and ends at 46297844 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC00563   43707
Cards
Entrez_Gene (NCBI)LINC00563  100861554  long intergenic non-protein coding RNA 563
Aliases
GeneCards (Weizmann)LINC00563
Ensembl hg19 (Hinxton)ENSG00000261097 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000261097 [Gene_View]  chr13:46296445-46297844 [Contig_View]  LINC00563 [Vega]
ICGC DataPortalENSG00000261097
TCGA cBioPortalLINC00563
AceView (NCBI)LINC00563
Genatlas (Paris)LINC00563
WikiGenes100861554
SOURCE (Princeton)LINC00563
Genetics Home Reference (NIH)LINC00563
Genomic and cartography
GoldenPath hg38 (UCSC)LINC00563  -     chr13:46296445-46297844 -  13q14.13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC00563  -     13q14.13   [Description]    (hg19-Feb_2009)
EnsemblLINC00563 - 13q14.13 [CytoView hg19]  LINC00563 - 13q14.13 [CytoView hg38]
Mapping of homologs : NCBILINC00563 [Mapview hg19]  LINC00563 [Mapview hg38]
Gene and transcription
Genbank (Entrez)U79295
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC00563
Cluster EST : UnigeneHs.90866 [ NCBI ]
CGAP (NCI)Hs.90866
Alternative Splicing GalleryENSG00000261097
Gene ExpressionLINC00563 [ NCBI-GEO ]   LINC00563 [ EBI - ARRAY_EXPRESS ]   LINC00563 [ SEEK ]   LINC00563 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC00563 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100861554
GTEX Portal (Tissue expression)LINC00563
Human Protein AtlasENSG00000261097-LINC00563 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC00563
DMDM Disease mutations100861554
Blocks (Seattle)LINC00563
Human Protein Atlas [tissue]ENSG00000261097-LINC00563 [tissue]
Protein Interaction databases
FunCoupENSG00000261097
BioGRIDLINC00563
STRING (EMBL)LINC00563
ZODIACLINC00563
Ontologies - Pathways
Huge Navigator LINC00563 [HugePedia]
snp3D : Map Gene to Disease100861554
BioCentury BCIQLINC00563
ClinGenLINC00563
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100861554
Clinical trialLINC00563
Miscellaneous
canSAR (ICR)LINC00563 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC00563
EVEXLINC00563
GoPubMedLINC00563
iHOPLINC00563
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:28:25 CET 2017

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