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LINC00564 (long intergenic non-protein coding RNA 564)

Identity

Other alias-
HGNC (Hugo) LINC00564
LocusID (NCBI) 100861546
Atlas_Id 65500
Location 13q31.1  [Link to chromosome band 13q31]
Location_base_pair Starts at 81225866 and ends at 81226983 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC00564   43708
Cards
Entrez_Gene (NCBI)LINC00564  100861546  long intergenic non-protein coding RNA 564
Aliases
GeneCards (Weizmann)LINC00564
Ensembl hg19 (Hinxton)ENSG00000260094 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000260094 [Gene_View]  chr13:81225866-81226983 [Contig_View]  LINC00564 [Vega]
ICGC DataPortalENSG00000260094
TCGA cBioPortalLINC00564
AceView (NCBI)LINC00564
Genatlas (Paris)LINC00564
WikiGenes100861546
SOURCE (Princeton)LINC00564
Genetics Home Reference (NIH)LINC00564
Genomic and cartography
GoldenPath hg38 (UCSC)LINC00564  -     chr13:81225866-81226983 -  13q31.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC00564  -     13q31.1   [Description]    (hg19-Feb_2009)
EnsemblLINC00564 - 13q31.1 [CytoView hg19]  LINC00564 - 13q31.1 [CytoView hg38]
Mapping of homologs : NCBILINC00564 [Mapview hg19]  LINC00564 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC039360
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC00564
Cluster EST : UnigeneHs.539621 [ NCBI ]
CGAP (NCI)Hs.539621
Alternative Splicing GalleryENSG00000260094
Gene ExpressionLINC00564 [ NCBI-GEO ]   LINC00564 [ EBI - ARRAY_EXPRESS ]   LINC00564 [ SEEK ]   LINC00564 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC00564 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100861546
GTEX Portal (Tissue expression)LINC00564
Human Protein AtlasENSG00000260094-LINC00564 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC00564
DMDM Disease mutations100861546
Blocks (Seattle)LINC00564
Human Protein Atlas [tissue]ENSG00000260094-LINC00564 [tissue]
Protein Interaction databases
FunCoupENSG00000260094
BioGRIDLINC00564
STRING (EMBL)LINC00564
ZODIACLINC00564
Ontologies - Pathways
Huge Navigator LINC00564 [HugePedia]
snp3D : Map Gene to Disease100861546
BioCentury BCIQLINC00564
ClinGenLINC00564
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100861546
Clinical trialLINC00564
Miscellaneous
canSAR (ICR)LINC00564 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC00564
EVEXLINC00564
GoPubMedLINC00564
iHOPLINC00564
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 11:54:31 CET 2017

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