Atlas of Genetics and Cytogenetics in Oncology and Haematology


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LINC00570 (long intergenic non-protein coding RNA 570)

Identity

Alias_symbol (synonym)ncRNA-a5
Other alias
HGNC (Hugo) LINC00570
LocusID (NCBI) 100874055
Atlas_Id 65504
Location 2p25.1  [Link to chromosome band 2p25]
Location_base_pair Starts at 11393981 and ends at 11403077 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC00570   43717
Cards
Entrez_Gene (NCBI)LINC00570  100874055  long intergenic non-protein coding RNA 570
AliasesncRNA-a5
GeneCards (Weizmann)LINC00570
Ensembl hg19 (Hinxton)ENSG00000224177 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000224177 [Gene_View]  chr2:11393981-11403077 [Contig_View]  LINC00570 [Vega]
ICGC DataPortalENSG00000224177
TCGA cBioPortalLINC00570
AceView (NCBI)LINC00570
Genatlas (Paris)LINC00570
WikiGenes100874055
SOURCE (Princeton)LINC00570
Genetics Home Reference (NIH)LINC00570
Genomic and cartography
GoldenPath hg38 (UCSC)LINC00570  -     chr2:11393981-11403077 +  2p25.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC00570  -     2p25.1   [Description]    (hg19-Feb_2009)
EnsemblLINC00570 - 2p25.1 [CytoView hg19]  LINC00570 - 2p25.1 [CytoView hg38]
Mapping of homologs : NCBILINC00570 [Mapview hg19]  LINC00570 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI217162 BX102688
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC00570
Cluster EST : UnigeneHs.102428 [ NCBI ]
CGAP (NCI)Hs.102428
Alternative Splicing GalleryENSG00000224177
Gene ExpressionLINC00570 [ NCBI-GEO ]   LINC00570 [ EBI - ARRAY_EXPRESS ]   LINC00570 [ SEEK ]   LINC00570 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC00570 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100874055
GTEX Portal (Tissue expression)LINC00570
Human Protein AtlasENSG00000224177-LINC00570 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC00570
DMDM Disease mutations100874055
Blocks (Seattle)LINC00570
Human Protein Atlas [tissue]ENSG00000224177-LINC00570 [tissue]
Protein Interaction databases
FunCoupENSG00000224177
BioGRIDLINC00570
STRING (EMBL)LINC00570
ZODIACLINC00570
Ontologies - Pathways
Huge Navigator LINC00570 [HugePedia]
snp3D : Map Gene to Disease100874055
BioCentury BCIQLINC00570
ClinGenLINC00570
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100874055
Clinical trialLINC00570
Miscellaneous
canSAR (ICR)LINC00570 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC00570
EVEXLINC00570
GoPubMedLINC00570
iHOPLINC00570
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 11:54:32 CET 2017

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