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LINC00571 (long intergenic non-protein coding RNA 571)

Identity

Other alias-
HGNC (Hugo) LINC00571
LocusID (NCBI) 100874188
Atlas_Id 65505
Location 13q13.3  [Link to chromosome band 13q13]
Location_base_pair Starts at 38050817 and ends at 38143232 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC00571   43721
Cards
Entrez_Gene (NCBI)LINC00571  100874188  long intergenic non-protein coding RNA 571
Aliases
GeneCards (Weizmann)LINC00571
Ensembl hg19 (Hinxton)ENSG00000223685 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000223685 [Gene_View]  chr13:38050817-38143232 [Contig_View]  LINC00571 [Vega]
ICGC DataPortalENSG00000223685
TCGA cBioPortalLINC00571
AceView (NCBI)LINC00571
Genatlas (Paris)LINC00571
WikiGenes100874188
SOURCE (Princeton)LINC00571
Genetics Home Reference (NIH)LINC00571
Genomic and cartography
GoldenPath hg38 (UCSC)LINC00571  -     chr13:38050817-38143232 -  13q13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC00571  -     13q13.3   [Description]    (hg19-Feb_2009)
EnsemblLINC00571 - 13q13.3 [CytoView hg19]  LINC00571 - 13q13.3 [CytoView hg38]
Mapping of homologs : NCBILINC00571 [Mapview hg19]  LINC00571 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BM023585
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC00571
Cluster EST : UnigeneHs.569249 [ NCBI ]
CGAP (NCI)Hs.569249
Alternative Splicing GalleryENSG00000223685
Gene ExpressionLINC00571 [ NCBI-GEO ]   LINC00571 [ EBI - ARRAY_EXPRESS ]   LINC00571 [ SEEK ]   LINC00571 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC00571 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100874188
GTEX Portal (Tissue expression)LINC00571
Human Protein AtlasENSG00000223685-LINC00571 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC00571
DMDM Disease mutations100874188
Blocks (Seattle)LINC00571
Human Protein Atlas [tissue]ENSG00000223685-LINC00571 [tissue]
Protein Interaction databases
FunCoupENSG00000223685
BioGRIDLINC00571
STRING (EMBL)LINC00571
ZODIACLINC00571
Ontologies - Pathways
Huge Navigator LINC00571 [HugePedia]
snp3D : Map Gene to Disease100874188
BioCentury BCIQLINC00571
ClinGenLINC00571
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100874188
Clinical trialLINC00571
Miscellaneous
canSAR (ICR)LINC00571 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC00571
EVEXLINC00571
GoPubMedLINC00571
iHOPLINC00571
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Nov 20 19:37:10 CET 2017

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