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LINC00572 (long intergenic non-protein coding RNA 572)

Identity

Other alias-
HGNC (Hugo) LINC00572
LocusID (NCBI) 100861573
Atlas_Id 65506
Location 13q12.3  [Link to chromosome band 13q12]
Location_base_pair Starts at 29918647 and ends at 29926651 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC00572   43722
Cards
Entrez_Gene (NCBI)LINC00572  100861573  long intergenic non-protein coding RNA 572
Aliases
GeneCards (Weizmann)LINC00572
Ensembl hg19 (Hinxton)ENSG00000224405 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000224405 [Gene_View]  chr13:29918647-29926651 [Contig_View]  LINC00572 [Vega]
ICGC DataPortalENSG00000224405
TCGA cBioPortalLINC00572
AceView (NCBI)LINC00572
Genatlas (Paris)LINC00572
WikiGenes100861573
SOURCE (Princeton)LINC00572
Genetics Home Reference (NIH)LINC00572
Genomic and cartography
GoldenPath hg38 (UCSC)LINC00572  -     chr13:29918647-29926651 -  13q12.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC00572  -     13q12.3   [Description]    (hg19-Feb_2009)
EnsemblLINC00572 - 13q12.3 [CytoView hg19]  LINC00572 - 13q12.3 [CytoView hg38]
Mapping of homologs : NCBILINC00572 [Mapview hg19]  LINC00572 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC039674
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC00572
Cluster EST : UnigeneHs.585619 [ NCBI ]
CGAP (NCI)Hs.585619
Alternative Splicing GalleryENSG00000224405
Gene ExpressionLINC00572 [ NCBI-GEO ]   LINC00572 [ EBI - ARRAY_EXPRESS ]   LINC00572 [ SEEK ]   LINC00572 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC00572 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100861573
GTEX Portal (Tissue expression)LINC00572
Human Protein AtlasENSG00000224405-LINC00572 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC00572
DMDM Disease mutations100861573
Blocks (Seattle)LINC00572
Human Protein Atlas [tissue]ENSG00000224405-LINC00572 [tissue]
Protein Interaction databases
FunCoupENSG00000224405
BioGRIDLINC00572
STRING (EMBL)LINC00572
ZODIACLINC00572
Ontologies - Pathways
Huge Navigator LINC00572 [HugePedia]
snp3D : Map Gene to Disease100861573
BioCentury BCIQLINC00572
ClinGenLINC00572
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100861573
Clinical trialLINC00572
Miscellaneous
canSAR (ICR)LINC00572 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC00572
EVEXLINC00572
GoPubMedLINC00572
iHOPLINC00572
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Nov 20 19:37:10 CET 2017

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