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LINC00574 (long intergenic non-protein coding RNA 574)

Identity

Alias_namesC6orf208
chromosome 6 open reading frame 208
Alias_symbol (synonym)FLJ13162
dJ182D15.1
Other alias
HGNC (Hugo) LINC00574
LocusID (NCBI) 80069
Atlas_Id 65507
Location 6_KI270797v1_alt  [Link to chromosome band 6]
Location_base_pair Starts at 65523 and ends at 78075 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC00574   21598
Cards
Entrez_Gene (NCBI)LINC00574  80069  long intergenic non-protein coding RNA 574
AliasesC6orf208; dJ182D15.1
GeneCards (Weizmann)LINC00574
Ensembl hg19 (Hinxton)ENSG00000231690 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000231690 [Gene_View]  chr6_KI270797v1_alt:65523-78075 [Contig_View]  LINC00574 [Vega]
ICGC DataPortalENSG00000231690
TCGA cBioPortalLINC00574
AceView (NCBI)LINC00574
Genatlas (Paris)LINC00574
WikiGenes80069
SOURCE (Princeton)LINC00574
Genetics Home Reference (NIH)LINC00574
Genomic and cartography
GoldenPath hg38 (UCSC)LINC00574  -     chr6_KI270797v1_alt:65523-78075 +  6_KI270797v1_alt   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC00574  -     6_KI270797v1_alt   [Description]    (hg19-Feb_2009)
EnsemblLINC00574 - 6_KI270797v1_alt [CytoView hg19]  LINC00574 - 6_KI270797v1_alt [CytoView hg38]
Mapping of homologs : NCBILINC00574 [Mapview hg19]  LINC00574 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK023224 BC101251 BC101252 BC101253 BC101396
RefSeq transcript (Entrez)NM_025002
RefSeq genomic (Entrez)NC_000006 NC_018917 NT_187552
Consensus coding sequences : CCDS (NCBI)LINC00574
Cluster EST : UnigeneHs.677182 [ NCBI ]
CGAP (NCI)Hs.677182
Alternative Splicing GalleryENSG00000231690
Gene ExpressionLINC00574 [ NCBI-GEO ]   LINC00574 [ EBI - ARRAY_EXPRESS ]   LINC00574 [ SEEK ]   LINC00574 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC00574 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)80069
GTEX Portal (Tissue expression)LINC00574
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H8X3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H8X3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H8X3
Splice isoforms : SwissVarQ9H8X3
PhosPhoSitePlusQ9H8X3
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC00574
DMDM Disease mutations80069
Blocks (Seattle)LINC00574
SuperfamilyQ9H8X3
Human Protein AtlasENSG00000231690
Peptide AtlasQ9H8X3
HPRD12876
IPIIPI00017394   
Protein Interaction databases
DIP (DOE-UCLA)Q9H8X3
IntAct (EBI)Q9H8X3
FunCoupENSG00000231690
BioGRIDLINC00574
STRING (EMBL)LINC00574
ZODIACLINC00574
Ontologies - Pathways
QuickGOQ9H8X3
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkLINC00574
Atlas of Cancer Signalling NetworkLINC00574
Wikipedia pathwaysLINC00574
Orthology - Evolution
OrthoDB80069
GeneTree (enSembl)ENSG00000231690
Phylogenetic Trees/Animal Genes : TreeFamLINC00574
HOVERGENQ9H8X3
HOGENOMQ9H8X3
Homologs : HomoloGeneLINC00574
Homology/Alignments : Family Browser (UCSC)LINC00574
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLINC00574 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LINC00574
dbVarLINC00574
ClinVarLINC00574
1000_GenomesLINC00574 
Exome Variant ServerLINC00574
ExAC (Exome Aggregation Consortium)LINC00574 (select the gene name)
Genetic variants : HAPMAP80069
Genomic Variants (DGV)LINC00574 [DGVbeta]
DECIPHERLINC00574 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLINC00574 
Mutations
ICGC Data PortalLINC00574 
TCGA Data PortalLINC00574 
Broad Tumor PortalLINC00574
OASIS PortalLINC00574 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDLINC00574
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LINC00574
DgiDB (Drug Gene Interaction Database)LINC00574
DoCM (Curated mutations)LINC00574 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LINC00574 (select a term)
intoGenLINC00574
Cancer3DLINC00574(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenLINC00574
Genetic Testing Registry LINC00574
NextProtQ9H8X3 [Medical]
TSGene80069
GENETestsLINC00574
Target ValidationLINC00574
Huge Navigator LINC00574 [HugePedia]
snp3D : Map Gene to Disease80069
BioCentury BCIQLINC00574
ClinGenLINC00574
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD80069
Chemical/Pharm GKB GenePA134938928
Clinical trialLINC00574
Miscellaneous
canSAR (ICR)LINC00574 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC00574
EVEXLINC00574
GoPubMedLINC00574
iHOPLINC00574
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:13:21 CEST 2017

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