Atlas of Genetics and Cytogenetics in Oncology and Haematology


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LINC00575 (long intergenic non-protein coding RNA 575)

Identity

Alias_namesC4orf11
chromosome 4 open reading frame 11
Other alias
HGNC (Hugo) LINC00575
LocusID (NCBI) 439934
Atlas_Id 65508
Location 4q21.22  [Link to chromosome band 4q21]
Location_base_pair Starts at 82613113 and ends at 82621437 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC00575   21342
Cards
Entrez_Gene (NCBI)LINC00575  439934  long intergenic non-protein coding RNA 575
AliasesC4orf11
GeneCards (Weizmann)LINC00575
Ensembl hg19 (Hinxton)ENSG00000231782 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000231782 [Gene_View]  chr4:82613113-82621437 [Contig_View]  LINC00575 [Vega]
ICGC DataPortalENSG00000231782
TCGA cBioPortalLINC00575
AceView (NCBI)LINC00575
Genatlas (Paris)LINC00575
WikiGenes439934
SOURCE (Princeton)LINC00575
Genetics Home Reference (NIH)LINC00575
Genomic and cartography
GoldenPath hg38 (UCSC)LINC00575  -     chr4:82613113-82621437 -  4q21.22   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC00575  -     4q21.22   [Description]    (hg19-Feb_2009)
EnsemblLINC00575 - 4q21.22 [CytoView hg19]  LINC00575 - 4q21.22 [CytoView hg38]
Mapping of homologs : NCBILINC00575 [Mapview hg19]  LINC00575 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AY316301 AY316302
RefSeq transcript (Entrez)NM_001033661
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC00575
Cluster EST : UnigeneHs.457189 [ NCBI ]
CGAP (NCI)Hs.457189
Alternative Splicing GalleryENSG00000231782
Gene ExpressionLINC00575 [ NCBI-GEO ]   LINC00575 [ EBI - ARRAY_EXPRESS ]   LINC00575 [ SEEK ]   LINC00575 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC00575 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)439934
GTEX Portal (Tissue expression)LINC00575
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6W349   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6W349  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6W349
Splice isoforms : SwissVarQ6W349
PhosPhoSitePlusQ6W349
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC00575
DMDM Disease mutations439934
Blocks (Seattle)LINC00575
SuperfamilyQ6W349
Human Protein AtlasENSG00000231782
Peptide AtlasQ6W349
IPIIPI00398427   
Protein Interaction databases
DIP (DOE-UCLA)Q6W349
IntAct (EBI)Q6W349
FunCoupENSG00000231782
BioGRIDLINC00575
STRING (EMBL)LINC00575
ZODIACLINC00575
Ontologies - Pathways
QuickGOQ6W349
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkLINC00575
Atlas of Cancer Signalling NetworkLINC00575
Wikipedia pathwaysLINC00575
Orthology - Evolution
OrthoDB439934
GeneTree (enSembl)ENSG00000231782
Phylogenetic Trees/Animal Genes : TreeFamLINC00575
HOVERGENQ6W349
HOGENOMQ6W349
Homologs : HomoloGeneLINC00575
Homology/Alignments : Family Browser (UCSC)LINC00575
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLINC00575 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LINC00575
dbVarLINC00575
ClinVarLINC00575
1000_GenomesLINC00575 
Exome Variant ServerLINC00575
ExAC (Exome Aggregation Consortium)LINC00575 (select the gene name)
Genetic variants : HAPMAP439934
Genomic Variants (DGV)LINC00575 [DGVbeta]
DECIPHERLINC00575 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLINC00575 
Mutations
ICGC Data PortalLINC00575 
TCGA Data PortalLINC00575 
Broad Tumor PortalLINC00575
OASIS PortalLINC00575 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDLINC00575
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LINC00575
DgiDB (Drug Gene Interaction Database)LINC00575
DoCM (Curated mutations)LINC00575 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LINC00575 (select a term)
intoGenLINC00575
Cancer3DLINC00575(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenLINC00575
Genetic Testing Registry LINC00575
NextProtQ6W349 [Medical]
TSGene439934
GENETestsLINC00575
Target ValidationLINC00575
Huge Navigator LINC00575 [HugePedia]
snp3D : Map Gene to Disease439934
BioCentury BCIQLINC00575
ClinGenLINC00575
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD439934
Chemical/Pharm GKB GenePA134920074
Clinical trialLINC00575
Miscellaneous
canSAR (ICR)LINC00575 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC00575
EVEXLINC00575
GoPubMedLINC00575
iHOPLINC00575
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:56:54 CEST 2017

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