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LINC00578 (long intergenic non-protein coding RNA 578)

Identity

Other alias-
HGNC (Hugo) LINC00578
LocusID (NCBI) 100505566
Atlas_Id 65510
Location 3q26.32  [Link to chromosome band 3q26]
Location_base_pair Starts at 177159709 and ends at 177470492 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC00578   43807
Cards
Entrez_Gene (NCBI)LINC00578  100505566  long intergenic non-protein coding RNA 578
Aliases
GeneCards (Weizmann)LINC00578
Ensembl hg19 (Hinxton) [Gene_View]  chr3:177159709-177470492 [Contig_View]  LINC00578 [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr3:177159709-177470492 [Contig_View]  LINC00578 [Vega]
TCGA cBioPortalLINC00578
AceView (NCBI)LINC00578
Genatlas (Paris)LINC00578
WikiGenes100505566
SOURCE (Princeton)LINC00578
Genetics Home Reference (NIH)LINC00578
Genomic and cartography
GoldenPath hg19 (UCSC)LINC00578  -     chr3:177159709-177470492 +  3q26.32   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)LINC00578  -     3q26.32   [Description]    (hg38-Dec_2013)
EnsemblLINC00578 - 3q26.32 [CytoView hg19]  LINC00578 - 3q26.32 [CytoView hg38]
Mapping of homologs : NCBILINC00578 [Mapview hg19]  LINC00578 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI792089 BX101293 DB235147 HG496332 HG496333
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)NC_000003 NC_018914 NT_005612 NW_004929311
Consensus coding sequences : CCDS (NCBI)LINC00578
Cluster EST : UnigeneHs.581170 [ NCBI ]
CGAP (NCI)Hs.581170
Gene ExpressionLINC00578 [ NCBI-GEO ]   LINC00578 [ EBI - ARRAY_EXPRESS ]   LINC00578 [ SEEK ]   LINC00578 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC00578 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100505566
GTEX Portal (Tissue expression)LINC00578
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC00578
DMDM Disease mutations100505566
Blocks (Seattle)LINC00578
Protein Interaction databases
BioGRIDLINC00578
STRING (EMBL)LINC00578
ZODIACLINC00578
Ontologies - Pathways
Huge Navigator LINC00578 [HugePedia]
snp3D : Map Gene to Disease100505566
BioCentury BCIQLINC00578
ClinGenLINC00578
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100505566
Clinical trialLINC00578
Miscellaneous
canSAR (ICR)LINC00578 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC00578
EVEXLINC00578
GoPubMedLINC00578
iHOPLINC00578
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:12:01 CET 2017

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