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LINC00581 (long intergenic non-protein coding RNA 581)

Identity

Other aliaslinc-MBOAT1-4
HGNC (Hugo) LINC00581
LocusID (NCBI) 100874531
Atlas_Id 65511
Location 6p22.3  [Link to chromosome band 6p22]
Location_base_pair Starts at 21486061 and ends at 21511892 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC00581   43840
Cards
Entrez_Gene (NCBI)LINC00581  100874531  long intergenic non-protein coding RNA 581
Aliaseslinc-MBOAT1-4
GeneCards (Weizmann)LINC00581
Ensembl hg19 (Hinxton)ENSG00000280989 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000280989 [Gene_View]  ENSG00000280989 [Sequence]  chr6:21486061-21511892 [Contig_View]  LINC00581 [Vega]
ICGC DataPortalENSG00000280989
TCGA cBioPortalLINC00581
AceView (NCBI)LINC00581
Genatlas (Paris)LINC00581
WikiGenes100874531
SOURCE (Princeton)LINC00581
Genetics Home Reference (NIH)LINC00581
Genomic and cartography
GoldenPath hg38 (UCSC)LINC00581  -     chr6:21486061-21511892 -  6p22.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC00581  -     6p22.3   [Description]    (hg19-Feb_2009)
EnsemblLINC00581 - 6p22.3 [CytoView hg19]  LINC00581 - 6p22.3 [CytoView hg38]
Mapping of homologs : NCBILINC00581 [Mapview hg19]  LINC00581 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA910749 BX118339 HG975386
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC00581
Cluster EST : UnigeneHs.738315 [ NCBI ]
CGAP (NCI)Hs.738315
Alternative Splicing GalleryENSG00000280989
Gene ExpressionLINC00581 [ NCBI-GEO ]   LINC00581 [ EBI - ARRAY_EXPRESS ]   LINC00581 [ SEEK ]   LINC00581 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC00581 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100874531
GTEX Portal (Tissue expression)LINC00581
Human Protein AtlasENSG00000280989-LINC00581 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC00581
DMDM Disease mutations100874531
Blocks (Seattle)LINC00581
Human Protein Atlas [tissue]ENSG00000280989-LINC00581 [tissue]
Protein Interaction databases
FunCoupENSG00000280989
BioGRIDLINC00581
STRING (EMBL)LINC00581
ZODIACLINC00581
Ontologies - Pathways
Huge Navigator LINC00581 [HugePedia]
snp3D : Map Gene to Disease100874531
BioCentury BCIQLINC00581
ClinGenLINC00581
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100874531
Clinical trialLINC00581
Miscellaneous
canSAR (ICR)LINC00581 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC00581
EVEXLINC00581
GoPubMedLINC00581
iHOPLINC00581
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 13:53:08 CEST 2018

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