Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

LINC00583 (long intergenic non-protein coding RNA 583)

Identity

Alias_namesC9orf146
chromosome 9 open reading frame 146
Other alias
HGNC (Hugo) LINC00583
LocusID (NCBI) 100113404
Atlas_Id 65513
Location 9p23  [Link to chromosome band 9p23]
Location_base_pair Starts at 13927970 and ends at 13945606 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC00583   31437
Cards
Entrez_Gene (NCBI)LINC00583  100113404  long intergenic non-protein coding RNA 583
AliasesC9orf146
GeneCards (Weizmann)LINC00583
Ensembl hg19 (Hinxton)ENSG00000205636 [Gene_View]  chr9:13927970-13945606 [Contig_View]  LINC00583 [Vega]
Ensembl hg38 (Hinxton)ENSG00000205636 [Gene_View]  chr9:13927970-13945606 [Contig_View]  LINC00583 [Vega]
ICGC DataPortalENSG00000205636
TCGA cBioPortalLINC00583
AceView (NCBI)LINC00583
Genatlas (Paris)LINC00583
WikiGenes100113404
SOURCE (Princeton)LINC00583
Genetics Home Reference (NIH)LINC00583
Genomic and cartography
GoldenPath hg19 (UCSC)LINC00583  -     chr9:13927970-13945606 +  9p23   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)LINC00583  -     9p23   [Description]    (hg38-Dec_2013)
EnsemblLINC00583 - 9p23 [CytoView hg19]  LINC00583 - 9p23 [CytoView hg38]
Mapping of homologs : NCBILINC00583 [Mapview hg19]  LINC00583 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI286110 AW070422 HG501900
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)NC_000009 NC_018920 NT_008413 NW_004929342
Consensus coding sequences : CCDS (NCBI)LINC00583
Cluster EST : UnigeneHs.149786 [ NCBI ]
CGAP (NCI)Hs.149786
Alternative Splicing GalleryENSG00000205636
Gene ExpressionLINC00583 [ NCBI-GEO ]   LINC00583 [ EBI - ARRAY_EXPRESS ]   LINC00583 [ SEEK ]   LINC00583 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC00583 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100113404
GTEX Portal (Tissue expression)LINC00583
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC00583
DMDM Disease mutations100113404
Blocks (Seattle)LINC00583
Human Protein AtlasENSG00000205636
Protein Interaction databases
FunCoupENSG00000205636
BioGRIDLINC00583
STRING (EMBL)LINC00583
ZODIACLINC00583
Ontologies - Pathways
Huge Navigator LINC00583 [HugePedia]
snp3D : Map Gene to Disease100113404
BioCentury BCIQLINC00583
ClinGenLINC00583
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100113404
Chemical/Pharm GKB GenePA162380838
Clinical trialLINC00583
Miscellaneous
canSAR (ICR)LINC00583 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC00583
EVEXLINC00583
GoPubMedLINC00583
iHOPLINC00583
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:12:02 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.