Atlas of Genetics and Cytogenetics in Oncology and Haematology


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LINC00587 (long intergenic non-protein coding RNA 587)

Identity

Alias_namesC9orf107
chromosome 9 open reading frame 107
Alias_symbol (synonym)bA785H23.1
Other alias
HGNC (Hugo) LINC00587
LocusID (NCBI) 414319
Atlas_Id 65514
Location 9q31.1  [Link to chromosome band 9q31]
Location_base_pair Starts at 102519637 and ends at 102657509 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC00587   31372
Cards
Entrez_Gene (NCBI)LINC00587  414319  long intergenic non-protein coding RNA 587
AliasesC9orf107; bA785H23.1
GeneCards (Weizmann)LINC00587
Ensembl hg19 (Hinxton)ENSG00000204250 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000204250 [Gene_View]  chr9:102519637-102657509 [Contig_View]  LINC00587 [Vega]
ICGC DataPortalENSG00000204250
TCGA cBioPortalLINC00587
AceView (NCBI)LINC00587
Genatlas (Paris)LINC00587
WikiGenes414319
SOURCE (Princeton)LINC00587
Genetics Home Reference (NIH)LINC00587
Genomic and cartography
GoldenPath hg38 (UCSC)LINC00587  -     chr9:102519637-102657509 +  9q31.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC00587  -     9q31.1   [Description]    (hg19-Feb_2009)
EnsemblLINC00587 - 9q31.1 [CytoView hg19]  LINC00587 - 9q31.1 [CytoView hg38]
Mapping of homologs : NCBILINC00587 [Mapview hg19]  LINC00587 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC038565
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC00587
Cluster EST : UnigeneHs.385790 [ NCBI ]
CGAP (NCI)Hs.385790
Alternative Splicing GalleryENSG00000204250
Gene ExpressionLINC00587 [ NCBI-GEO ]   LINC00587 [ EBI - ARRAY_EXPRESS ]   LINC00587 [ SEEK ]   LINC00587 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC00587 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)414319
GTEX Portal (Tissue expression)LINC00587
Protein : pattern, domain, 3D structure
UniProt/SwissProtB1AMM8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtB1AMM8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProB1AMM8
Splice isoforms : SwissVarB1AMM8
PhosPhoSitePlusB1AMM8
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC00587
DMDM Disease mutations414319
Blocks (Seattle)LINC00587
SuperfamilyB1AMM8
Human Protein AtlasENSG00000204250
Peptide AtlasB1AMM8
IPIIPI00479785   
Protein Interaction databases
DIP (DOE-UCLA)B1AMM8
IntAct (EBI)B1AMM8
FunCoupENSG00000204250
BioGRIDLINC00587
STRING (EMBL)LINC00587
ZODIACLINC00587
Ontologies - Pathways
QuickGOB1AMM8
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkLINC00587
Atlas of Cancer Signalling NetworkLINC00587
Wikipedia pathwaysLINC00587
Orthology - Evolution
OrthoDB414319
GeneTree (enSembl)ENSG00000204250
Phylogenetic Trees/Animal Genes : TreeFamLINC00587
HOVERGENB1AMM8
HOGENOMB1AMM8
Homologs : HomoloGeneLINC00587
Homology/Alignments : Family Browser (UCSC)LINC00587
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLINC00587 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LINC00587
dbVarLINC00587
ClinVarLINC00587
1000_GenomesLINC00587 
Exome Variant ServerLINC00587
ExAC (Exome Aggregation Consortium)LINC00587 (select the gene name)
Genetic variants : HAPMAP414319
Genomic Variants (DGV)LINC00587 [DGVbeta]
DECIPHERLINC00587 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLINC00587 
Mutations
ICGC Data PortalLINC00587 
TCGA Data PortalLINC00587 
Broad Tumor PortalLINC00587
OASIS PortalLINC00587 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDLINC00587
BioMutasearch LINC00587
DgiDB (Drug Gene Interaction Database)LINC00587
DoCM (Curated mutations)LINC00587 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LINC00587 (select a term)
intoGenLINC00587
Cancer3DLINC00587(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenLINC00587
Genetic Testing Registry LINC00587
NextProtB1AMM8 [Medical]
TSGene414319
GENETestsLINC00587
Target ValidationLINC00587
Huge Navigator LINC00587 [HugePedia]
snp3D : Map Gene to Disease414319
BioCentury BCIQLINC00587
ClinGenLINC00587
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD414319
Chemical/Pharm GKB GenePA134864225
Clinical trialLINC00587
Miscellaneous
canSAR (ICR)LINC00587 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC00587
EVEXLINC00587
GoPubMedLINC00587
iHOPLINC00587
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:56:56 CEST 2017

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