Atlas of Genetics and Cytogenetics in Oncology and Haematology


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LINC00588 (long intergenic non-protein coding RNA 588)

Identity

Alias_namesC8orf71
chromosome 8 open reading frame 71
Alias_symbol (synonym)DKFZP434F122
Other alias
HGNC (Hugo) LINC00588
LocusID (NCBI) 26138
Atlas_Id 65515
Location 8_KI270814v1_alt  [Link to chromosome band 8]
Location_base_pair Starts at 117957 and ends at 123145 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC00588   24494
Cards
Entrez_Gene (NCBI)LINC00588  26138  long intergenic non-protein coding RNA 588
AliasesC8orf71
GeneCards (Weizmann)LINC00588
Ensembl hg19 (Hinxton)ENSG00000215117 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000215117 [Gene_View]  chr8_KI270814v1_alt:117957-123145 [Contig_View]  LINC00588 [Vega]
ICGC DataPortalENSG00000215117
TCGA cBioPortalLINC00588
AceView (NCBI)LINC00588
Genatlas (Paris)LINC00588
WikiGenes26138
SOURCE (Princeton)LINC00588
Genetics Home Reference (NIH)LINC00588
Genomic and cartography
GoldenPath hg38 (UCSC)LINC00588  -     chr8_KI270814v1_alt:117957-123145 +  8_KI270814v1_alt   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC00588  -     8_KI270814v1_alt   [Description]    (hg19-Feb_2009)
EnsemblLINC00588 - 8_KI270814v1_alt [CytoView hg19]  LINC00588 - 8_KI270814v1_alt [CytoView hg38]
Mapping of homologs : NCBILINC00588 [Mapview hg19]  LINC00588 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AL080200 BC125038
RefSeq transcript (Entrez)NM_015643
RefSeq genomic (Entrez)NC_000008 NC_018919 NT_187566
Consensus coding sequences : CCDS (NCBI)LINC00588
Cluster EST : UnigeneHs.159352 [ NCBI ]
CGAP (NCI)Hs.159352
Alternative Splicing GalleryENSG00000215117
Gene ExpressionLINC00588 [ NCBI-GEO ]   LINC00588 [ EBI - ARRAY_EXPRESS ]   LINC00588 [ SEEK ]   LINC00588 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC00588 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)26138
GTEX Portal (Tissue expression)LINC00588
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y4M8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y4M8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y4M8
Splice isoforms : SwissVarQ9Y4M8
PhosPhoSitePlusQ9Y4M8
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC00588
DMDM Disease mutations26138
Blocks (Seattle)LINC00588
SuperfamilyQ9Y4M8
Human Protein AtlasENSG00000215117
Peptide AtlasQ9Y4M8
IPIIPI00024099   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y4M8
IntAct (EBI)Q9Y4M8
FunCoupENSG00000215117
BioGRIDLINC00588
STRING (EMBL)LINC00588
ZODIACLINC00588
Ontologies - Pathways
QuickGOQ9Y4M8
Ontology : AmiGOprotein binding  
Ontology : EGO-EBIprotein binding  
NDEx NetworkLINC00588
Atlas of Cancer Signalling NetworkLINC00588
Wikipedia pathwaysLINC00588
Orthology - Evolution
OrthoDB26138
GeneTree (enSembl)ENSG00000215117
Phylogenetic Trees/Animal Genes : TreeFamLINC00588
HOVERGENQ9Y4M8
HOGENOMQ9Y4M8
Homologs : HomoloGeneLINC00588
Homology/Alignments : Family Browser (UCSC)LINC00588
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLINC00588 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LINC00588
dbVarLINC00588
ClinVarLINC00588
1000_GenomesLINC00588 
Exome Variant ServerLINC00588
ExAC (Exome Aggregation Consortium)LINC00588 (select the gene name)
Genetic variants : HAPMAP26138
Genomic Variants (DGV)LINC00588 [DGVbeta]
DECIPHERLINC00588 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLINC00588 
Mutations
ICGC Data PortalLINC00588 
TCGA Data PortalLINC00588 
Broad Tumor PortalLINC00588
OASIS PortalLINC00588 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDLINC00588
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LINC00588
DgiDB (Drug Gene Interaction Database)LINC00588
DoCM (Curated mutations)LINC00588 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LINC00588 (select a term)
intoGenLINC00588
Cancer3DLINC00588(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenLINC00588
Genetic Testing Registry LINC00588
NextProtQ9Y4M8 [Medical]
TSGene26138
GENETestsLINC00588
Target ValidationLINC00588
Huge Navigator LINC00588 [HugePedia]
snp3D : Map Gene to Disease26138
BioCentury BCIQLINC00588
ClinGenLINC00588
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD26138
Chemical/Pharm GKB GenePA142672334
Clinical trialLINC00588
Miscellaneous
canSAR (ICR)LINC00588 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC00588
EVEXLINC00588
GoPubMedLINC00588
iHOPLINC00588
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 15:56:56 CEST 2017

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