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LINC00589 (long intergenic non-protein coding RNA 589)

Identity

Alias (NCBI)C8orf75
TSLNC8
HGNC (Hugo) LINC00589
HGNC Alias symbTSLNC8
HGNC Alias nametumor suppressor lncRNA on chromosome 8p12
HGNC Previous nameC8orf75
HGNC Previous namechromosome 8 open reading frame 75
LocusID (NCBI) 619351
Atlas_Id 57904
Location 8p12  [Link to chromosome band 8p12]
Location_base_pair Starts at 29721260 and ends at 29748109 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

Nomenclature
HGNC (Hugo)LINC00589   32299
Cards
Entrez_Gene (NCBI)LINC00589    long intergenic non-protein coding RNA 589
AliasesC8orf75; TSLNC8
GeneCards (Weizmann)LINC00589
Ensembl hg19 (Hinxton)ENSG00000251191 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000251191 [Gene_View]  ENSG00000251191 [Sequence]  chr8:29721260-29748109 [Contig_View]  LINC00589 [Vega]
ICGC DataPortalENSG00000251191
TCGA cBioPortalLINC00589
AceView (NCBI)LINC00589
Genatlas (Paris)LINC00589
SOURCE (Princeton)LINC00589
Genetics Home Reference (NIH)LINC00589
Genomic and cartography
GoldenPath hg38 (UCSC)LINC00589  -     chr8:29721260-29748109 -  8p12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC00589  -     8p12   [Description]    (hg19-Feb_2009)
GoldenPathLINC00589 - 8p12 [CytoView hg19]  LINC00589 - 8p12 [CytoView hg38]
ImmunoBaseENSG00000251191
Genome Data Viewer NCBILINC00589 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)BC003524 BC014230
RefSeq transcript (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC00589
Gene ExpressionLINC00589 [ NCBI-GEO ]   LINC00589 [ EBI - ARRAY_EXPRESS ]   LINC00589 [ SEEK ]   LINC00589 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC00589 [ Firebrowse - Broad ]
GenevisibleExpression of LINC00589 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)619351
GTEX Portal (Tissue expression)LINC00589
Human Protein AtlasENSG00000251191-LINC00589 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC00589
Human Protein Atlas [tissue]ENSG00000251191-LINC00589 [tissue]
Protein Interaction databases
BioGRIDLINC00589
STRING (EMBL)LINC00589
ZODIACLINC00589
Ontologies - Pathways
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXLINC00589
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Oct 4 15:16:06 CEST 2021

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