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LINC00595 (long intergenic non-protein coding RNA 595)

Identity

Alias_namesC10orf101
chromosome 10 open reading frame 101
Other alias
HGNC (Hugo) LINC00595
LocusID (NCBI) 414243
Atlas_Id 65519
Location 10q22.3  [Link to chromosome band 10q22]
Location_base_pair Starts at 78267328 and ends at 78280213 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC00595   31430
Cards
Entrez_Gene (NCBI)LINC00595  414243  long intergenic non-protein coding RNA 595
AliasesC10orf101
GeneCards (Weizmann)LINC00595
Ensembl hg19 (Hinxton)ENSG00000227136 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000227136 [Gene_View]  chr10:78267328-78280213 [Contig_View]  LINC00595 [Vega]
ICGC DataPortalENSG00000227136
TCGA cBioPortalLINC00595
AceView (NCBI)LINC00595
Genatlas (Paris)LINC00595
WikiGenes414243
SOURCE (Princeton)LINC00595
Genetics Home Reference (NIH)LINC00595
Genomic and cartography
GoldenPath hg38 (UCSC)LINC00595  -  &ncsp;nbwp; chr10:78267328-78280213 +  10q22.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC00595  -     10q22.3   [Description]    (hg19-Feb_2009)
EnsemblLINC00595 - 10q22.3 [CytoView hg19]  LINC00595 - 10q22.3 [CytoView hg38]
Mapping of homologs : NCBILINC00595 [Mapview hg19]  LINC00595 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA256374 AK126491 BX280027
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC00595
Cluster EST : UnigeneHs.55047 [ NCBI ]
CGAP (NCI)Hs.55047
Alternative Splicing GalleryENSG00000227136
Gene ExpressionLINC00595 [ NCBI-GEO ]   LINC00595 [ EBI - ARRAY_EXPRESS ]   LINC00595 [ SEEK ]   LINC00595 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC00595 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)414243
GTEX Portal (Tissue expression)LINC00595
Human Protein AtlasENSG00000227136-LINC00595 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC00595
DMDM Disease mutations414243
Blocks (Seattle)LINC00595
Human Protein Atlas [tissue]ENSG00000227136-LINC00595 [tissue]
Protein Interaction databases
FunCoupENSG00000227136
BioGRIDLINC00595
STRING (EMBL)LINC00595
ZODIACLINC00595
Ontologies - Pathways
Huge Navigator LINC00595 [HugePedia]
snp3D : Map Gene to Disease414243
BioCentury BCIQLINC00595
ClinGenLINC00595
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD414243
Chemical/Pharm GKB GenePA134949385
Clinical trialLINC00595
Miscellaneous
canSAR (ICR)LINC00595 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC00595
EVEXLINC00595
GoPubMedLINC00595
iHOPLINC00595
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:21:47 CET 2017

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