Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

LINC00596 (long intergenic non-protein coding RNA 596)

Identity

Alias_namesC14orf165
chromosome 14 open reading frame 165
Alias_symbol (synonym)CNSLT1I7G
Other alias
HGNC (Hugo) LINC00596
LocusID (NCBI) 414767
Atlas_Id 65520
Location 14q11.2  [Link to chromosome band 14q11]
Location_base_pair Starts at 23922248 and ends at 23934568 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)LINC00596   23167
Cards
Entrez_Gene (NCBI)LINC00596  414767  long intergenic non-protein coding RNA 596
AliasesC14orf165; CNSLT1I7G
GeneCards (Weizmann)LINC00596
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr14:23922248-23934568 [Contig_View]  LINC00596 [Vega]
TCGA cBioPortalLINC00596
AceView (NCBI)LINC00596
Genatlas (Paris)LINC00596
WikiGenes414767
SOURCE (Princeton)LINC00596
Genetics Home Reference (NIH)LINC00596
Genomic and cartography
GoldenPath hg38 (UCSC)LINC00596  -     chr14:23922248-23934568 -  14q11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC00596  -     14q11.2   [Description]    (hg19-Feb_2009)
EnsemblLINC00596 - 14q11.2 [CytoView hg19]  LINC00596 - 14q11.2 [CytoView hg38]
Mapping of homologs : NCBILINC00596 [Mapview hg19]  LINC00596 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BX161431
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC00596
Gene ExpressionLINC00596 [ NCBI-GEO ]   LINC00596 [ EBI - ARRAY_EXPRESS ]   LINC00596 [ SEEK ]   LINC00596 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC00596 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)414767
GTEX Portal (Tissue expression)LINC00596
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86U02   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86U02  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86U02
Splice isoforms : SwissVarQ86U02
PhosPhoSitePlusQ86U02
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC00596
DMDM Disease mutations414767
Blocks (Seattle)LINC00596
SuperfamilyQ86U02
Peptide AtlasQ86U02
Protein Interaction databases
DIP (DOE-UCLA)Q86U02
IntAct (EBI)Q86U02
BioGRIDLINC00596
STRING (EMBL)LINC00596
ZODIACLINC00596
Ontologies - Pathways
QuickGOQ86U02
Ontology : AmiGOintegral component of membrane  skeletal muscle fiber development  
Ontology : EGO-EBIintegral component of membrane  skeletal muscle fiber development  
NDEx NetworkLINC00596
Atlas of Cancer Signalling NetworkLINC00596
Wikipedia pathwaysLINC00596
Orthology - Evolution
OrthoDB414767
Phylogenetic Trees/Animal Genes : TreeFamLINC00596
HOVERGENQ86U02
HOGENOMQ86U02
Homologs : HomoloGeneLINC00596
Homology/Alignments : Family Browser (UCSC)LINC00596
Gene fusions - Rearrangements
Tumor Fusion PortalLINC00596
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLINC00596 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LINC00596
dbVarLINC00596
ClinVarLINC00596
1000_GenomesLINC00596 
Exome Variant ServerLINC00596
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP414767
Genomic Variants (DGV)LINC00596 [DGVbeta]
DECIPHERLINC00596 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLINC00596 
Mutations
ICGC Data PortalLINC00596 
TCGA Data PortalLINC00596 
Broad Tumor PortalLINC00596
OASIS PortalLINC00596 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDLINC00596
BioMutasearch LINC00596
DgiDB (Drug Gene Interaction Database)LINC00596
DoCM (Curated mutations)LINC00596 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LINC00596 (select a term)
intoGenLINC00596
Cancer3DLINC00596(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETLINC00596
MedgenLINC00596
Genetic Testing Registry LINC00596
NextProtQ86U02 [Medical]
TSGene414767
GENETestsLINC00596
Target ValidationLINC00596
Huge Navigator LINC00596 [HugePedia]
snp3D : Map Gene to Disease414767
BioCentury BCIQLINC00596
ClinGenLINC00596
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD414767
Clinical trialLINC00596
Miscellaneous
canSAR (ICR)LINC00596 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC00596
EVEXLINC00596
GoPubMedLINC00596
iHOPLINC00596
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:29:43 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.