Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

LINC00597 (long intergenic non-protein coding RNA 597)

Identity

Alias_namesC15orf5
chromosome 15 open reading frame 5
Other alias
HGNC (Hugo) LINC00597
LocusID (NCBI) 81698
Atlas_Id 65521
Location 15q24.3  [Link to chromosome band 15q24]
Location_base_pair Starts at 77223908 and ends at 77225404 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC00597   1193
Cards
Entrez_Gene (NCBI)LINC00597  81698  long intergenic non-protein coding RNA 597
AliasesC15orf5
GeneCards (Weizmann)LINC00597
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr15:77223908-77225404 [Contig_View]  LINC00597 [Vega]
TCGA cBioPortalLINC00597
AceView (NCBI)LINC00597
Genatlas (Paris)LINC00597
WikiGenes81698
SOURCE (Princeton)LINC00597
Genetics Home Reference (NIH)LINC00597
Genomic and cartography
GoldenPath hg38 (UCSC)LINC00597  -     chr15:77223908-77225404 -  15q24.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC00597  -     15q24.3   [Description]    (hg19-Feb_2009)
EnsemblLINC00597 - 15q24.3 [CytoView hg19]  LINC00597 - 15q24.3 [CytoView hg38]
Mapping of homologs : NCBILINC00597 [Mapview hg19]  LINC00597 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF216224 AL109679 BC069765 BC103988 BC103989
RefSeq transcript (Entrez)NM_030944
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC00597
Cluster EST : UnigeneHs.656938 [ NCBI ]
CGAP (NCI)Hs.656938
Gene ExpressionLINC00597 [ NCBI-GEO ]   LINC00597 [ EBI - ARRAY_EXPRESS ]   LINC00597 [ SEEK ]   LINC00597 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC00597 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)81698
GTEX Portal (Tissue expression)LINC00597
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H2U6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H2U6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H2U6
Splice isoforms : SwissVarQ9H2U6
PhosPhoSitePlusQ9H2U6
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC00597
DMDM Disease mutations81698
Blocks (Seattle)LINC00597
SuperfamilyQ9H2U6
Peptide AtlasQ9H2U6
HPRD12672
IPIIPI00008858   
Protein Interaction databases
DIP (DOE-UCLA)Q9H2U6
IntAct (EBI)Q9H2U6
BioGRIDLINC00597
STRING (EMBL)LINC00597
ZODIACLINC00597
Ontologies - Pathways
QuickGOQ9H2U6
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkLINC00597
Atlas of Cancer Signalling NetworkLINC00597
Wikipedia pathwaysLINC00597
Orthology - Evolution
OrthoDB81698
Phylogenetic Trees/Animal Genes : TreeFamLINC00597
HOVERGENQ9H2U6
HOGENOMQ9H2U6
Homologs : HomoloGeneLINC00597
Homology/Alignments : Family Browser (UCSC)LINC00597
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLINC00597 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LINC00597
dbVarLINC00597
ClinVarLINC00597
1000_GenomesLINC00597 
Exome Variant ServerLINC00597
ExAC (Exome Aggregation Consortium)LINC00597 (select the gene name)
Genetic variants : HAPMAP81698
Genomic Variants (DGV)LINC00597 [DGVbeta]
DECIPHERLINC00597 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLINC00597 
Mutations
ICGC Data PortalLINC00597 
TCGA Data PortalLINC00597 
Broad Tumor PortalLINC00597
OASIS PortalLINC00597 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDLINC00597
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LINC00597
DgiDB (Drug Gene Interaction Database)LINC00597
DoCM (Curated mutations)LINC00597 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LINC00597 (select a term)
intoGenLINC00597
Cancer3DLINC00597(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenLINC00597
Genetic Testing Registry LINC00597
NextProtQ9H2U6 [Medical]
TSGene81698
GENETestsLINC00597
Target ValidationLINC00597
Huge Navigator LINC00597 [HugePedia]
snp3D : Map Gene to Disease81698
BioCentury BCIQLINC00597
ClinGenLINC00597
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD81698
Chemical/Pharm GKB GenePA25520
Clinical trialLINC00597
Miscellaneous
canSAR (ICR)LINC00597 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC00597
EVEXLINC00597
GoPubMedLINC00597
iHOPLINC00597
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 15:56:57 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.