Atlas of Genetics and Cytogenetics in Oncology and Haematology


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LINC00599 (long intergenic non-protein coding RNA 599)

Identity

Alias_symbol (synonym)Rncr3
Other alias
HGNC (Hugo) LINC00599
LocusID (NCBI) 157627
Atlas_Id 65522
Location 8p23.1  [Link to chromosome band 8p23]
Location_base_pair Starts at 9900064 and ends at 9903329 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC00599   27231
Cards
Entrez_Gene (NCBI)LINC00599  157627  long intergenic non-protein coding RNA 599
AliasesRncr3
GeneCards (Weizmann)LINC00599
Ensembl hg19 (Hinxton)ENSG00000253230 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000253230 [Gene_View]  chr8:9900064-9903329 [Contig_View]  LINC00599 [Vega]
ICGC DataPortalENSG00000253230
TCGA cBioPortalLINC00599
AceView (NCBI)LINC00599
Genatlas (Paris)LINC00599
WikiGenes157627
SOURCE (Princeton)LINC00599
Genetics Home Reference (NIH)LINC00599
Genomic and cartography
GoldenPath hg38 (UCSC)LINC00599  -     chr8:9900064-9903329 -  8p23.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC00599  -     8p23.1   [Description]    (hg19-Feb_2009)
EnsemblLINC00599 - 8p23.1 [CytoView hg19]  LINC00599 - 8p23.1 [CytoView hg38]
Mapping of homologs : NCBILINC00599 [Mapview hg19]  LINC00599 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF052108 AK055056 AK091593 AL832535 BC042097
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC00599
Cluster EST : UnigeneHs.12513 [ NCBI ]
CGAP (NCI)Hs.12513
Alternative Splicing GalleryENSG00000253230
Gene ExpressionLINC00599 [ NCBI-GEO ]   LINC00599 [ EBI - ARRAY_EXPRESS ]   LINC00599 [ SEEK ]   LINC00599 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC00599 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)157627
GTEX Portal (Tissue expression)LINC00599
Human Protein AtlasENSG00000253230-LINC00599 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC00599
DMDM Disease mutations157627
Blocks (Seattle)LINC00599
Human Protein Atlas [tissue]ENSG00000253230-LINC00599 [tissue]
Protein Interaction databases
FunCoupENSG00000253230
BioGRIDLINC00599
STRING (EMBL)LINC00599
ZODIACLINC00599
Ontologies - Pathways
Huge Navigator LINC00599 [HugePedia]
snp3D : Map Gene to Disease157627
BioCentury BCIQLINC00599
ClinGenLINC00599
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD157627
Clinical trialLINC00599
Miscellaneous
canSAR (ICR)LINC00599 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC00599
EVEXLINC00599
GoPubMedLINC00599
iHOPLINC00599
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:18:20 CET 2017

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