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LINC00602 (long intergenic non-protein coding RNA 602)

Identity

Other alias-
HGNC (Hugo) LINC00602
LocusID (NCBI) 441177
Atlas_Id 65524
Location 6q27  [Link to chromosome band 6q27]
Location_base_pair Starts at 165987551 and ends at 165989614 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC00602   43917
Cards
Entrez_Gene (NCBI)LINC00602  441177  long intergenic non-protein coding RNA 602
Aliases
GeneCards (Weizmann)LINC00602
Ensembl hg19 (Hinxton)ENSG00000281832 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000281832 [Gene_View]  ENSG00000281832 [Sequence]  chr6:165987551-165989614 [Contig_View]  LINC00602 [Vega]
ICGC DataPortalENSG00000281832
TCGA cBioPortalLINC00602
AceView (NCBI)LINC00602
Genatlas (Paris)LINC00602
WikiGenes441177
SOURCE (Princeton)LINC00602
Genetics Home Reference (NIH)LINC00602
Genomic and cartography
GoldenPath hg38 (UCSC)LINC00602  -     chr6:165987551-165989614 +  6q27   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC00602  -     6q27   [Description]    (hg19-Feb_2009)
EnsemblLINC00602 - 6q27 [CytoView hg19]  LINC00602 - 6q27 [CytoView hg38]
Mapping of homologs : NCBILINC00602 [Mapview hg19]  LINC00602 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK094116 BC110806
RefSeq transcript (Entrez)NM_001013720
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC00602
Cluster EST : UnigeneHs.708964 [ NCBI ]
CGAP (NCI)Hs.708964
Alternative Splicing GalleryENSG00000281832
Gene ExpressionLINC00602 [ NCBI-GEO ]   LINC00602 [ EBI - ARRAY_EXPRESS ]   LINC00602 [ SEEK ]   LINC00602 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC00602 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)441177
GTEX Portal (Tissue expression)LINC00602
Human Protein AtlasENSG00000281832-LINC00602 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N9P0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N9P0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N9P0
Splice isoforms : SwissVarQ8N9P0
PhosPhoSitePlusQ8N9P0
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC00602
DMDM Disease mutations441177
Blocks (Seattle)LINC00602
SuperfamilyQ8N9P0
Human Protein Atlas [tissue]ENSG00000281832-LINC00602 [tissue]
Peptide AtlasQ8N9P0
HPRD18645
IPIIPI00167777   
Protein Interaction databases
DIP (DOE-UCLA)Q8N9P0
IntAct (EBI)Q8N9P0
FunCoupENSG00000281832
BioGRIDLINC00602
STRING (EMBL)LINC00602
ZODIACLINC00602
Ontologies - Pathways
QuickGOQ8N9P0
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkLINC00602
Atlas of Cancer Signalling NetworkLINC00602
Wikipedia pathwaysLINC00602
Orthology - Evolution
OrthoDB441177
GeneTree (enSembl)ENSG00000281832
Phylogenetic Trees/Animal Genes : TreeFamLINC00602
HOVERGENQ8N9P0
HOGENOMQ8N9P0
Homologs : HomoloGeneLINC00602
Homology/Alignments : Family Browser (UCSC)LINC00602
Gene fusions - Rearrangements
Fusion : QuiverLINC00602
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLINC00602 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LINC00602
dbVarLINC00602
ClinVarLINC00602
1000_GenomesLINC00602 
Exome Variant ServerLINC00602
ExAC (Exome Aggregation Consortium)ENSG00000281832
GNOMAD BrowserENSG00000281832
Varsome BrowserLINC00602
Genetic variants : HAPMAP441177
Genomic Variants (DGV)LINC00602 [DGVbeta]
DECIPHERLINC00602 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLINC00602 
Mutations
ICGC Data PortalLINC00602 
TCGA Data PortalLINC00602 
Broad Tumor PortalLINC00602
OASIS PortalLINC00602 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDLINC00602
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LINC00602
DgiDB (Drug Gene Interaction Database)LINC00602
DoCM (Curated mutations)LINC00602 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LINC00602 (select a term)
intoGenLINC00602
Cancer3DLINC00602(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETLINC00602
MedgenLINC00602
Genetic Testing Registry LINC00602
NextProtQ8N9P0 [Medical]
TSGene441177
GENETestsLINC00602
Target ValidationLINC00602
Huge Navigator LINC00602 [HugePedia]
snp3D : Map Gene to Disease441177
BioCentury BCIQLINC00602
ClinGenLINC00602
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD441177
Clinical trialLINC00602
Miscellaneous
canSAR (ICR)LINC00602 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC00602
EVEXLINC00602
GoPubMedLINC00602
iHOPLINC00602
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 13:53:10 CEST 2018

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