Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

LINC00609 (long intergenic non-protein coding RNA 609)

Identity

Other alias-
HGNC (Hugo) LINC00609
LocusID (NCBI) 101101773
Atlas_Id 65530
Location 14q13.2  [Link to chromosome band 14q13]
Location_base_pair Starts at 36070427 and ends at 36165288 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC00609   43960
Cards
Entrez_Gene (NCBI)LINC00609  101101773  long intergenic non-protein coding RNA 609
Aliases
GeneCards (Weizmann)LINC00609
Ensembl hg19 (Hinxton)ENSG00000257585 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000257585 [Gene_View]  chr14:36070427-36165288 [Contig_View]  LINC00609 [Vega]
ICGC DataPortalENSG00000257585
TCGA cBioPortalLINC00609
AceView (NCBI)LINC00609
Genatlas (Paris)LINC00609
WikiGenes101101773
SOURCE (Princeton)LINC00609
Genetics Home Reference (NIH)LINC00609
Genomic and cartography
GoldenPath hg38 (UCSC)LINC00609  -     chr14:36070427-36165288 +  14q13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC00609  -     14q13.2   [Description]    (hg19-Feb_2009)
EnsemblLINC00609 - 14q13.2 [CytoView hg19]  LINC00609 - 14q13.2 [CytoView hg38]
Mapping of homologs : NCBILINC00609 [Mapview hg19]  LINC00609 [Mapview hg38]
Gene and transcription
Genbank (Entrez)DN993271
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC00609
Cluster EST : UnigeneHs.640678 [ NCBI ]
CGAP (NCI)Hs.640678
Alternative Splicing GalleryENSG00000257585
Gene ExpressionLINC00609 [ NCBI-GEO ]   LINC00609 [ EBI - ARRAY_EXPRESS ]   LINC00609 [ SEEK ]   LINC00609 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC00609 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)101101773
GTEX Portal (Tissue expression)LINC00609
Human Protein AtlasENSG00000257585-LINC00609 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC00609
DMDM Disease mutations101101773
Blocks (Seattle)LINC00609
Human Protein Atlas [tissue]ENSG00000257585-LINC00609 [tissue]
Protein Interaction databases
FunCoupENSG00000257585
BioGRIDLINC00609
STRING (EMBL)LINC00609
ZODIACLINC00609
Ontologies - Pathways
Huge Navigator LINC00609 [HugePedia]
snp3D : Map Gene to Disease101101773
BioCentury BCIQLINC00609
ClinGenLINC00609
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD101101773
Clinical trialLINC00609
Miscellaneous
canSAR (ICR)LINC00609 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC00609
EVEXLINC00609
GoPubMedLINC00609
iHOPLINC00609
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 11:54:37 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.