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LINC00610 (long intergenic non-protein coding RNA 610)

Identity

Alias_namesC11orf55
chromosome 11 open reading frame 55
Alias_symbol (synonym)FLJ45212
Other alias
HGNC (Hugo) LINC00610
LocusID (NCBI) 399879
Atlas_Id 65531
Location 11p13  [Link to chromosome band 11p13]
Location_base_pair Starts at 36290834 and ends at 36294909 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)LINC00610   23262
Cards
Entrez_Gene (NCBI)LINC00610  399879  long intergenic non-protein coding RNA 610
AliasesC11orf55
GeneCards (Weizmann)LINC00610
Ensembl hg19 (Hinxton) [Gene_View]  chr11:36290834-36294909 [Contig_View]  LINC00610 [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr11:36290834-36294909 [Contig_View]  LINC00610 [Vega]
TCGA cBioPortalLINC00610
AceView (NCBI)LINC00610
Genatlas (Paris)LINC00610
WikiGenes399879
SOURCE (Princeton)LINC00610
Genetics Home Reference (NIH)LINC00610
Genomic and cartography
GoldenPath hg19 (UCSC)LINC00610  -     chr11:36290834-36294909 -  11p13   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)LINC00610  -     11p13   [Description]    (hg38-Dec_2013)
EnsemblLINC00610 - 11p13 [CytoView hg19]  LINC00610 - 11p13 [CytoView hg38]
Mapping of homologs : NCBILINC00610 [Mapview hg19]  LINC00610 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK127155
RefSeq transcript (Entrez)NM_207428
RefSeq genomic (Entrez)AC_000143 NC_000011 NT_009237 NW_001838022
Consensus coding sequences : CCDS (NCBI)LINC00610
Cluster EST : UnigeneHs.99443 [ NCBI ]
CGAP (NCI)Hs.99443
Gene ExpressionLINC00610 [ NCBI-GEO ]   LINC00610 [ EBI - ARRAY_EXPRESS ]   LINC00610 [ SEEK ]   LINC00610 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC00610 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)399879
GTEX Portal (Tissue expression)LINC00610
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6ZST8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6ZST8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6ZST8
Splice isoforms : SwissVarQ6ZST8
PhosPhoSitePlusQ6ZST8
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC00610
DMDM Disease mutations399879
Blocks (Seattle)LINC00610
SuperfamilyQ6ZST8
Peptide AtlasQ6ZST8
HPRD13500
IPIIPI00410503   
Protein Interaction databases
DIP (DOE-UCLA)Q6ZST8
IntAct (EBI)Q6ZST8
BioGRIDLINC00610
STRING (EMBL)LINC00610
ZODIACLINC00610
Ontologies - Pathways
QuickGOQ6ZST8
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkLINC00610
Atlas of Cancer Signalling NetworkLINC00610
Wikipedia pathwaysLINC00610
Orthology - Evolution
OrthoDB399879
Phylogenetic Trees/Animal Genes : TreeFamLINC00610
HOVERGENQ6ZST8
HOGENOMQ6ZST8
Homologs : HomoloGeneLINC00610
Homology/Alignments : Family Browser (UCSC)LINC00610
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLINC00610 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LINC00610
dbVarLINC00610
ClinVarLINC00610
1000_GenomesLINC00610 
Exome Variant ServerLINC00610
ExAC (Exome Aggregation Consortium)LINC00610 (select the gene name)
Genetic variants : HAPMAP399879
Genomic Variants (DGV)LINC00610 [DGVbeta]
DECIPHER (Syndromes)11:36290834-36294909  
CONAN: Copy Number AnalysisLINC00610 
Mutations
ICGC Data PortalLINC00610 
TCGA Data PortalLINC00610 
Broad Tumor PortalLINC00610
OASIS PortalLINC00610 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDLINC00610
BioMutasearch LINC00610
DgiDB (Drug Gene Interaction Database)LINC00610
DoCM (Curated mutations)LINC00610 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LINC00610 (select a term)
intoGenLINC00610
Cancer3DLINC00610(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenLINC00610
Genetic Testing Registry LINC00610
NextProtQ6ZST8 [Medical]
TSGene399879
GENETestsLINC00610
Huge Navigator LINC00610 [HugePedia]
snp3D : Map Gene to Disease399879
BioCentury BCIQLINC00610
ClinGenLINC00610
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD399879
Chemical/Pharm GKB GenePA143485350
Clinical trialLINC00610
Miscellaneous
canSAR (ICR)LINC00610 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC00610
EVEXLINC00610
GoPubMedLINC00610
iHOPLINC00610
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:12:06 CET 2017

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