Atlas of Genetics and Cytogenetics in Oncology and Haematology


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LINC00612 (long intergenic non-protein coding RNA 612)

Identity

Alias_namesC12orf33
chromosome 12 open reading frame 33
Alias_symbol (synonym)MGC40170
FLJ41814
Other alias
HGNC (Hugo) LINC00612
LocusID (NCBI) 253128
Atlas_Id 65532
Location 12p13.31  [Link to chromosome band 12p13]
Location_base_pair Starts at 9057538 and ends at 9065076 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC00612   28621
Cards
Entrez_Gene (NCBI)LINC00612  253128  long intergenic non-protein coding RNA 612
AliasesC12orf33
GeneCards (Weizmann)LINC00612
Ensembl hg19 (Hinxton)ENSG00000214851 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000214851 [Gene_View]  chr12:9057538-9065076 [Contig_View]  LINC00612 [Vega]
ICGC DataPortalENSG00000214851
TCGA cBioPortalLINC00612
AceView (NCBI)LINC00612
Genatlas (Paris)LINC00612
WikiGenes253128
SOURCE (Princeton)LINC00612
Genetics Home Reference (NIH)LINC00612
Genomic and cartography
GoldenPath hg38 (UCSC)LINC00612  -     chr12:9057538-9065076 -  12p13.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC00612  -     12p13.31   [Description]    (hg19-Feb_2009)
EnsemblLINC00612 - 12p13.31 [CytoView hg19]  LINC00612 - 12p13.31 [CytoView hg38]
Mapping of homologs : NCBILINC00612 [Mapview hg19]  LINC00612 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK123808 BC028195
RefSeq transcript (Entrez)NM_001039381
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC00612
Cluster EST : UnigeneHs.408739 [ NCBI ]
CGAP (NCI)Hs.408739
Alternative Splicing GalleryENSG00000214851
Gene ExpressionLINC00612 [ NCBI-GEO ]   LINC00612 [ EBI - ARRAY_EXPRESS ]   LINC00612 [ SEEK ]   LINC00612 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC00612 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)253128
GTEX Portal (Tissue expression)LINC00612
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N6U2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N6U2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N6U2
Splice isoforms : SwissVarQ8N6U2
PhosPhoSitePlusQ8N6U2
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC00612
DMDM Disease mutations253128
Blocks (Seattle)LINC00612
SuperfamilyQ8N6U2
Human Protein AtlasENSG00000214851
Peptide AtlasQ8N6U2
IPIIPI00167085   IPI00920988   
Protein Interaction databases
DIP (DOE-UCLA)Q8N6U2
IntAct (EBI)Q8N6U2
FunCoupENSG00000214851
BioGRIDLINC00612
STRING (EMBL)LINC00612
ZODIACLINC00612
Ontologies - Pathways
QuickGOQ8N6U2
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkLINC00612
Atlas of Cancer Signalling NetworkLINC00612
Wikipedia pathwaysLINC00612
Orthology - Evolution
OrthoDB253128
GeneTree (enSembl)ENSG00000214851
Phylogenetic Trees/Animal Genes : TreeFamLINC00612
HOVERGENQ8N6U2
HOGENOMQ8N6U2
Homologs : HomoloGeneLINC00612
Homology/Alignments : Family Browser (UCSC)LINC00612
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLINC00612 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LINC00612
dbVarLINC00612
ClinVarLINC00612
1000_GenomesLINC00612 
Exome Variant ServerLINC00612
ExAC (Exome Aggregation Consortium)LINC00612 (select the gene name)
Genetic variants : HAPMAP253128
Genomic Variants (DGV)LINC00612 [DGVbeta]
DECIPHERLINC00612 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLINC00612 
Mutations
ICGC Data PortalLINC00612 
TCGA Data PortalLINC00612 
Broad Tumor PortalLINC00612
OASIS PortalLINC00612 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDLINC00612
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LINC00612
DgiDB (Drug Gene Interaction Database)LINC00612
DoCM (Curated mutations)LINC00612 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LINC00612 (select a term)
intoGenLINC00612
Cancer3DLINC00612(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenLINC00612
Genetic Testing Registry LINC00612
NextProtQ8N6U2 [Medical]
TSGene253128
GENETestsLINC00612
Target ValidationLINC00612
Huge Navigator LINC00612 [HugePedia]
snp3D : Map Gene to Disease253128
BioCentury BCIQLINC00612
ClinGenLINC00612
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD253128
Chemical/Pharm GKB GenePA143485363
Clinical trialLINC00612
Miscellaneous
canSAR (ICR)LINC00612 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC00612
EVEXLINC00612
GoPubMedLINC00612
iHOPLINC00612
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 15:57:00 CEST 2017

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