Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

LINC00615 (long intergenic non-protein coding RNA 615)

Identity

Alias_namesC12orf37
chromosome 12 open reading frame 37
Alias_symbol (synonym)FLJ25378
Other alias
HGNC (Hugo) LINC00615
LocusID (NCBI) 439916
Atlas_Id 65534
Location 12q21.33  [Link to chromosome band 12q21]
Location_base_pair Starts at 90918023 and ends at 90948669 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC00615   26343
Cards
Entrez_Gene (NCBI)LINC00615  439916  long intergenic non-protein coding RNA 615
AliasesC12orf37
GeneCards (Weizmann)LINC00615
Ensembl hg19 (Hinxton)ENSG00000196243 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000196243 [Gene_View]  chr12:90918023-90948669 [Contig_View]  LINC00615 [Vega]
ICGC DataPortalENSG00000196243
TCGA cBioPortalLINC00615
AceView (NCBI)LINC00615
Genatlas (Paris)LINC00615
WikiGenes439916
SOURCE (Princeton)LINC00615
Genetics Home Reference (NIH)LINC00615
Genomic and cartography
GoldenPath hg38 (UCSC)LINC00615  -     chr12:90918023-90948669 +  12q21.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC00615  -     12q21.33   [Description]    (hg19-Feb_2009)
EnsemblLINC00615 - 12q21.33 [CytoView hg19]  LINC00615 - 12q21.33 [CytoView hg38]
Mapping of homologs : NCBILINC00615 [Mapview hg19]  LINC00615 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK058107
RefSeq transcript (Entrez)NM_001039384
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC00615
Cluster EST : UnigeneHs.350600 [ NCBI ]
CGAP (NCI)Hs.350600
Alternative Splicing GalleryENSG00000196243
Gene ExpressionLINC00615 [ NCBI-GEO ]   LINC00615 [ EBI - ARRAY_EXPRESS ]   LINC00615 [ SEEK ]   LINC00615 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC00615 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)439916
GTEX Portal (Tissue expression)LINC00615
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96LM1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96LM1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96LM1
Splice isoforms : SwissVarQ96LM1
PhosPhoSitePlusQ96LM1
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC00615
DMDM Disease mutations439916
Blocks (Seattle)LINC00615
SuperfamilyQ96LM1
Human Protein AtlasENSG00000196243
Peptide AtlasQ96LM1
IPIIPI00065081   
Protein Interaction databases
DIP (DOE-UCLA)Q96LM1
IntAct (EBI)Q96LM1
FunCoupENSG00000196243
BioGRIDLINC00615
STRING (EMBL)LINC00615
ZODIACLINC00615
Ontologies - Pathways
QuickGOQ96LM1
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkLINC00615
Atlas of Cancer Signalling NetworkLINC00615
Wikipedia pathwaysLINC00615
Orthology - Evolution
OrthoDB439916
GeneTree (enSembl)ENSG00000196243
Phylogenetic Trees/Animal Genes : TreeFamLINC00615
HOVERGENQ96LM1
HOGENOMQ96LM1
Homologs : HomoloGeneLINC00615
Homology/Alignments : Family Browser (UCSC)LINC00615
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLINC00615 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LINC00615
dbVarLINC00615
ClinVarLINC00615
1000_GenomesLINC00615 
Exome Variant ServerLINC00615
ExAC (Exome Aggregation Consortium)LINC00615 (select the gene name)
Genetic variants : HAPMAP439916
Genomic Variants (DGV)LINC00615 [DGVbeta]
DECIPHERLINC00615 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLINC00615 
Mutations
ICGC Data PortalLINC00615 
TCGA Data PortalLINC00615 
Broad Tumor PortalLINC00615
OASIS PortalLINC00615 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDLINC00615
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LINC00615
DgiDB (Drug Gene Interaction Database)LINC00615
DoCM (Curated mutations)LINC00615 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LINC00615 (select a term)
intoGenLINC00615
Cancer3DLINC00615(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenLINC00615
Genetic Testing Registry LINC00615
NextProtQ96LM1 [Medical]
TSGene439916
GENETestsLINC00615
Huge Navigator LINC00615 [HugePedia]
snp3D : Map Gene to Disease439916
BioCentury BCIQLINC00615
ClinGenLINC00615
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD439916
Chemical/Pharm GKB GenePA143485367
Clinical trialLINC00615
Miscellaneous
canSAR (ICR)LINC00615 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC00615
EVEXLINC00615
GoPubMedLINC00615
iHOPLINC00615
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri May 19 11:20:40 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.