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LINC00616 (long intergenic non-protein coding RNA 616)

Identity

Other alias-
HGNC (Hugo) LINC00616
LocusID (NCBI) 641365
Atlas_Id 65535
Location 4q28.3  [Link to chromosome band 4q28]
Location_base_pair Starts at 138027423 and ends at 138130685 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC00616   44065
Cards
Entrez_Gene (NCBI)LINC00616  641365  long intergenic non-protein coding RNA 616
Aliases
GeneCards (Weizmann)LINC00616
Ensembl hg19 (Hinxton)ENSG00000248307 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000248307 [Gene_View]  chr4:138027423-138130685 [Contig_View]  LINC00616 [Vega]
ICGC DataPortalENSG00000248307
TCGA cBioPortalLINC00616
AceView (NCBI)LINC00616
Genatlas (Paris)LINC00616
WikiGenes641365
SOURCE (Princeton)LINC00616
Genetics Home Reference (NIH)LINC00616
Genomic and cartography
GoldenPath hg38 (UCSC)LINC00616  -     chr4:138027423-138130685 -  4q28.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC00616  -     4q28.3   [Description]    (hg19-Feb_2009)
EnsemblLINC00616 - 4q28.3 [CytoView hg19]  LINC00616 - 4q28.3 [CytoView hg38]
Mapping of homologs : NCBILINC00616 [Mapview hg19]  LINC00616 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC042886
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC00616
Cluster EST : UnigeneHs.435630 [ NCBI ]
CGAP (NCI)Hs.435630
Alternative Splicing GalleryENSG00000248307
Gene ExpressionLINC00616 [ NCBI-GEO ]   LINC00616 [ EBI - ARRAY_EXPRESS ]   LINC00616 [ SEEK ]   LINC00616 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC00616 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)641365
GTEX Portal (Tissue expression)LINC00616
Human Protein AtlasENSG00000248307-LINC00616 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC00616
DMDM Disease mutations641365
Blocks (Seattle)LINC00616
Human Protein Atlas [tissue]ENSG00000248307-LINC00616 [tissue]
Protein Interaction databases
FunCoupENSG00000248307
BioGRIDLINC00616
STRING (EMBL)LINC00616
ZODIACLINC00616
Ontologies - Pathways
Huge Navigator LINC00616 [HugePedia]
snp3D : Map Gene to Disease641365
BioCentury BCIQLINC00616
ClinGenLINC00616
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD641365
Clinical trialLINC00616
Miscellaneous
canSAR (ICR)LINC00616 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC00616
EVEXLINC00616
GoPubMedLINC00616
iHOPLINC00616
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:10:07 CET 2017

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