Atlas of Genetics and Cytogenetics in Oncology and Haematology

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LINC00623 (long intergenic non-protein coding RNA 623)


Alias (NCBI)CH17-118O6.2
HGNC (Hugo) LINC00623
LocusID (NCBI) 728855
Atlas_Id 65541
Location 1p11.2  [Link to chromosome band 1p11]
Location_base_pair Starts at 120913217 and ends at 120955811 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)


Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute



External links

HGNC (Hugo)LINC00623   44252
Entrez_Gene (NCBI)LINC00623    long intergenic non-protein coding RNA 623
GeneCards (Weizmann)LINC00623
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]   [Sequence]  chr1:120913217-120955811 [Contig_View]  LINC00623 [Vega]
TCGA cBioPortalLINC00623
AceView (NCBI)LINC00623
Genatlas (Paris)LINC00623
SOURCE (Princeton)LINC00623
Genetics Home Reference (NIH)LINC00623
Genomic and cartography
GoldenPath hg38 (UCSC)LINC00623  -     chr1:120913217-120955811 +  1p11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC00623  -     1p11.2   [Description]    (hg19-Feb_2009)
GoldenPathLINC00623 - 1p11.2 [CytoView hg19]  LINC00623 - 1p11.2 [CytoView hg38]
Genome Data Viewer NCBILINC00623 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AK311378 BC009950 BC063535 BC089397 BC094809
RefSeq transcript (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC00623
Gene ExpressionLINC00623 [ NCBI-GEO ]   LINC00623 [ EBI - ARRAY_EXPRESS ]   LINC00623 [ SEEK ]   LINC00623 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC00623 [ Firebrowse - Broad ]
GenevisibleExpression of LINC00623 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)728855
GTEX Portal (Tissue expression)LINC00623
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC00623
Protein Interaction databases
Ontologies - Pathways
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:56:28 CEST 2021

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