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LINC00626 (long intergenic non-protein coding RNA 626)

Identity

Alias_symbol (synonym)MGC4473
Other alias-
HGNC (Hugo) LINC00626
LocusID (NCBI) 79100
Atlas_Id 65543
Location 1q24.2  [Link to chromosome band 1q24]
Location_base_pair Starts at 168786941 and ends at 168792888 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC00626   44257
Cards
Entrez_Gene (NCBI)LINC00626  79100  long intergenic non-protein coding RNA 626
Aliases
GeneCards (Weizmann)LINC00626
Ensembl hg19 (Hinxton)ENSG00000225826 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000225826 [Gene_View]  chr1:168786941-168792888 [Contig_View]  LINC00626 [Vega]
ICGC DataPortalENSG00000225826
TCGA cBioPortalLINC00626
AceView (NCBI)LINC00626
Genatlas (Paris)LINC00626
WikiGenes79100
SOURCE (Princeton)LINC00626
Genetics Home Reference (NIH)LINC00626
Genomic and cartography
GoldenPath hg38 (UCSC)LINC00626  -     chr1:168786941-168792888 +  1q24.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC00626  -     1q24.2   [Description]    (hg19-Feb_2009)
EnsemblLINC00626 - 1q24.2 [CytoView hg19]  LINC00626 - 1q24.2 [CytoView hg38]
Mapping of homologs : NCBILINC00626 [Mapview hg19]  LINC00626 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC001515 BC001841 BC009319 BC068047 BC082964
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC00626
Cluster EST : UnigeneHs.250624 [ NCBI ]
CGAP (NCI)Hs.250624
Alternative Splicing GalleryENSG00000225826
Gene ExpressionLINC00626 [ NCBI-GEO ]   LINC00626 [ EBI - ARRAY_EXPRESS ]   LINC00626 [ SEEK ]   LINC00626 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC00626 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)79100
GTEX Portal (Tissue expression)LINC00626
Human Protein AtlasENSG00000225826-LINC00626 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC00626
DMDM Disease mutations79100
Blocks (Seattle)LINC00626
Human Protein Atlas [tissue]ENSG00000225826-LINC00626 [tissue]
Protein Interaction databases
FunCoupENSG00000225826
BioGRIDLINC00626
STRING (EMBL)LINC00626
ZODIACLINC00626
Ontologies - Pathways
Huge Navigator LINC00626 [HugePedia]
snp3D : Map Gene to Disease79100
BioCentury BCIQLINC00626
ClinGenLINC00626
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79100
Clinical trialLINC00626
Miscellaneous
canSAR (ICR)LINC00626 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC00626
EVEXLINC00626
GoPubMedLINC00626
iHOPLINC00626
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 11:54:40 CET 2017

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