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LINC00635 (long intergenic non-protein coding RNA 635)

Identity

Other alias-
HGNC (Hugo) LINC00635
LocusID (NCBI) 151658
Atlas_Id 65550
Location 3q13.12  [Link to chromosome band 3q13]
Location_base_pair Starts at 107841662 and ends at 107878068 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC00635   27184
Cards
Entrez_Gene (NCBI)LINC00635  151658  long intergenic non-protein coding RNA 635
Aliases
GeneCards (Weizmann)LINC00635
Ensembl hg19 (Hinxton)ENSG00000241469 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000241469 [Gene_View]  chr3:107841662-107878068 [Contig_View]  LINC00635 [Vega]
ICGC DataPortalENSG00000241469
TCGA cBioPortalLINC00635
AceView (NCBI)LINC00635
Genatlas (Paris)LINC00635
WikiGenes151658
SOURCE (Princeton)LINC00635
Genetics Home Reference (NIH)LINC00635
Genomic and cartography
GoldenPath hg38 (UCSC)LINC00635  -     chr3:107841662-107878068 -  3q13.12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC00635  -     3q13.12   [Description]    (hg19-Feb_2009)
EnsemblLINC00635 - 3q13.12 [CytoView hg19]  LINC00635 - 3q13.12 [CytoView hg38]
Mapping of homologs : NCBILINC00635 [Mapview hg19]  LINC00635 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC039365 BC045586 BC101990 BC101991 BC104745
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC00635
Cluster EST : UnigeneHs.159043 [ NCBI ]
CGAP (NCI)Hs.159043
Alternative Splicing GalleryENSG00000241469
Gene ExpressionLINC00635 [ NCBI-GEO ]   LINC00635 [ EBI - ARRAY_EXPRESS ]   LINC00635 [ SEEK ]   LINC00635 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC00635 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)151658
GTEX Portal (Tissue expression)LINC00635
Human Protein AtlasENSG00000241469-LINC00635 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC00635
DMDM Disease mutations151658
Blocks (Seattle)LINC00635
Human Protein Atlas [tissue]ENSG00000241469-LINC00635 [tissue]
Protein Interaction databases
FunCoupENSG00000241469
BioGRIDLINC00635
STRING (EMBL)LINC00635
ZODIACLINC00635
Ontologies - Pathways
Huge Navigator LINC00635 [HugePedia]
snp3D : Map Gene to Disease151658
BioCentury BCIQLINC00635
ClinGenLINC00635
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD151658
Clinical trialLINC00635
Miscellaneous
canSAR (ICR)LINC00635 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC00635
EVEXLINC00635
GoPubMedLINC00635
iHOPLINC00635
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:07:49 CET 2017

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