Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

LINC00642 (long intergenic non-protein coding RNA 642)

Identity

Other alias-
HGNC (Hugo) LINC00642
LocusID (NCBI) 400238
Atlas_Id 65557
Location 14q32.11  [Link to chromosome band 14q32]
Location_base_pair Starts at 90455230 and ends at 90458905 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC00642   44293
Cards
Entrez_Gene (NCBI)LINC00642  400238  long intergenic non-protein coding RNA 642
Aliases
GeneCards (Weizmann)LINC00642
Ensembl hg19 (Hinxton)ENSG00000233208 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000233208 [Gene_View]  chr14:90455230-90458905 [Contig_View]  LINC00642 [Vega]
ICGC DataPortalENSG00000233208
TCGA cBioPortalLINC00642
AceView (NCBI)LINC00642
Genatlas (Paris)LINC00642
WikiGenes400238
SOURCE (Princeton)LINC00642
Genetics Home Reference (NIH)LINC00642
Genomic and cartography
GoldenPath hg38 (UCSC)LINC00642  -     chr14:90455230-90458905 +  14q32.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC00642  -     14q32.11   [Description]    (hg19-Feb_2009)
EnsemblLINC00642 - 14q32.11 [CytoView hg19]  LINC00642 - 14q32.11 [CytoView hg38]
Mapping of homologs : NCBILINC00642 [Mapview hg19]  LINC00642 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK093266 BC036259 BX101323
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC00642
Cluster EST : UnigeneHs.131037 [ NCBI ]
CGAP (NCI)Hs.131037
Alternative Splicing GalleryENSG00000233208
Gene ExpressionLINC00642 [ NCBI-GEO ]   LINC00642 [ EBI - ARRAY_EXPRESS ]   LINC00642 [ SEEK ]   LINC00642 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC00642 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)400238
GTEX Portal (Tissue expression)LINC00642
Human Protein AtlasENSG00000233208-LINC00642 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC00642
DMDM Disease mutations400238
Blocks (Seattle)LINC00642
Human Protein Atlas [tissue]ENSG00000233208-LINC00642 [tissue]
Protein Interaction databases
FunCoupENSG00000233208
BioGRIDLINC00642
STRING (EMBL)LINC00642
ZODIACLINC00642
Ontologies - Pathways
Huge Navigator LINC00642 [HugePedia]
snp3D : Map Gene to Disease400238
BioCentury BCIQLINC00642
ClinGenLINC00642
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD400238
Clinical trialLINC00642
Miscellaneous
canSAR (ICR)LINC00642 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC00642
EVEXLINC00642
GoPubMedLINC00642
iHOPLINC00642
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Nov 20 19:37:22 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.