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LINC00643 (long intergenic non-protein coding RNA 643)

Identity

Other alias-
HGNC (Hugo) LINC00643
LocusID (NCBI) 646113
Atlas_Id 65558
Location 14q23.2  [Link to chromosome band 14q23]
Location_base_pair Starts at 62132010 and ends at 62134183 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC00643   44296
Cards
Entrez_Gene (NCBI)LINC00643  646113  long intergenic non-protein coding RNA 643
Aliases
GeneCards (Weizmann)LINC00643
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr14:62132010-62134183 [Contig_View]  LINC00643 [Vega]
TCGA cBioPortalLINC00643
AceView (NCBI)LINC00643
Genatlas (Paris)LINC00643
WikiGenes646113
SOURCE (Princeton)LINC00643
Genetics Home Reference (NIH)LINC00643
Genomic and cartography
GoldenPath hg38 (UCSC)LINC00643  -     chr14:62132010-62134183 +  14q23.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC00643  -     14q23.2   [Description]    (hg19-Feb_2009)
EnsemblLINC00643 - 14q23.2 [CytoView hg19]  LINC00643 - 14q23.2 [CytoView hg38]
Mapping of homologs : NCBILINC00643 [Mapview hg19]  LINC00643 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK094533 AK096461 AK125380 AK311468 BC047065
RefSeq transcript (Entrez)NM_001039785
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC00643
Cluster EST : UnigeneHs.445241 [ NCBI ]
CGAP (NCI)Hs.445241
Gene ExpressionLINC00643 [ NCBI-GEO ]   LINC00643 [ EBI - ARRAY_EXPRESS ]   LINC00643 [ SEEK ]   LINC00643 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC00643 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)646113
GTEX Portal (Tissue expression)LINC00643
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86TS7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86TS7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86TS7
Splice isoforms : SwissVarQ86TS7
PhosPhoSitePlusQ86TS7
Domains : Interpro (EBI)UPF0730   
Domain families : Pfam (Sanger)UPF0730 (PF15827)   
Domain families : Pfam (NCBI)pfam15827   
Conserved Domain (NCBI)LINC00643
DMDM Disease mutations646113
Blocks (Seattle)LINC00643
SuperfamilyQ86TS7
Peptide AtlasQ86TS7
IPIIPI00827713   
Protein Interaction databases
DIP (DOE-UCLA)Q86TS7
IntAct (EBI)Q86TS7
BioGRIDLINC00643
STRING (EMBL)LINC00643
ZODIACLINC00643
Ontologies - Pathways
QuickGOQ86TS7
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkLINC00643
Atlas of Cancer Signalling NetworkLINC00643
Wikipedia pathwaysLINC00643
Orthology - Evolution
OrthoDB646113
Phylogenetic Trees/Animal Genes : TreeFamLINC00643
HOVERGENQ86TS7
HOGENOMQ86TS7
Homologs : HomoloGeneLINC00643
Homology/Alignments : Family Browser (UCSC)LINC00643
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLINC00643 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LINC00643
dbVarLINC00643
ClinVarLINC00643
1000_GenomesLINC00643 
Exome Variant ServerLINC00643
ExAC (Exome Aggregation Consortium)LINC00643 (select the gene name)
Genetic variants : HAPMAP646113
Genomic Variants (DGV)LINC00643 [DGVbeta]
DECIPHERLINC00643 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLINC00643 
Mutations
ICGC Data PortalLINC00643 
TCGA Data PortalLINC00643 
Broad Tumor PortalLINC00643
OASIS PortalLINC00643 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDLINC00643
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch LINC00643
DgiDB (Drug Gene Interaction Database)LINC00643
DoCM (Curated mutations)LINC00643 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LINC00643 (select a term)
intoGenLINC00643
Cancer3DLINC00643(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenLINC00643
Genetic Testing Registry LINC00643
NextProtQ86TS7 [Medical]
TSGene646113
GENETestsLINC00643
Target ValidationLINC00643
Huge Navigator LINC00643 [HugePedia]
snp3D : Map Gene to Disease646113
BioCentury BCIQLINC00643
ClinGenLINC00643
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD646113
Clinical trialLINC00643
Miscellaneous
canSAR (ICR)LINC00643 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC00643
EVEXLINC00643
GoPubMedLINC00643
iHOPLINC00643
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:13:28 CEST 2017

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