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LINC00648 (long intergenic non-protein coding RNA 648)

Identity

Other alias-
HGNC (Hugo) LINC00648
LocusID (NCBI) 100506433
Atlas_Id 65561
Location 14q21.3  [Link to chromosome band 14q21]
Location_base_pair Starts at 48234156 and ends at 48264217 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC00648   44302
Cards
Entrez_Gene (NCBI)LINC00648  100506433  long intergenic non-protein coding RNA 648
Aliases
GeneCards (Weizmann)LINC00648
Ensembl hg19 (Hinxton)ENSG00000259129 [Gene_View]  chr14:48234156-48264217 [Contig_View]  LINC00648 [Vega]
Ensembl hg38 (Hinxton)ENSG00000259129 [Gene_View]  chr14:48234156-48264217 [Contig_View]  LINC00648 [Vega]
ICGC DataPortalENSG00000259129
TCGA cBioPortalLINC00648
AceView (NCBI)LINC00648
Genatlas (Paris)LINC00648
WikiGenes100506433
SOURCE (Princeton)LINC00648
Genetics Home Reference (NIH)LINC00648
Genomic and cartography
GoldenPath hg19 (UCSC)LINC00648  -     chr14:48234156-48264217 -  14q21.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)LINC00648  -     14q21.3   [Description]    (hg38-Dec_2013)
EnsemblLINC00648 - 14q21.3 [CytoView hg19]  LINC00648 - 14q21.3 [CytoView hg38]
Mapping of homologs : NCBILINC00648 [Mapview hg19]  LINC00648 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK056212 AK056240 CA435241 HG506165 HG506168
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)NC_000014 NC_018925 NT_026437 NW_004929393
Consensus coding sequences : CCDS (NCBI)LINC00648
Cluster EST : UnigeneHs.547419 [ NCBI ]
CGAP (NCI)Hs.547419
Alternative Splicing GalleryENSG00000259129
Gene ExpressionLINC00648 [ NCBI-GEO ]   LINC00648 [ EBI - ARRAY_EXPRESS ]   LINC00648 [ SEEK ]   LINC00648 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC00648 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100506433
GTEX Portal (Tissue expression)LINC00648
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC00648
DMDM Disease mutations100506433
Blocks (Seattle)LINC00648
Human Protein AtlasENSG00000259129
Protein Interaction databases
FunCoupENSG00000259129
BioGRIDLINC00648
STRING (EMBL)LINC00648
ZODIACLINC00648
Ontologies - Pathways
Huge Navigator LINC00648 [HugePedia]
snp3D : Map Gene to Disease100506433
BioCentury BCIQLINC00648
ClinGenLINC00648
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100506433
Clinical trialLINC00648
Miscellaneous
canSAR (ICR)LINC00648 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC00648
EVEXLINC00648
GoPubMedLINC00648
iHOPLINC00648
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:12:12 CET 2017

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