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LINC00649 (long intergenic non-protein coding RNA 649)

Identity

Alias_symbol (synonym)TCONS_00028768
Other alias-
HGNC (Hugo) LINC00649
LocusID (NCBI) 100506334
Atlas_Id 65562
Location 21q22.11  [Link to chromosome band 21q22]
Location_base_pair Starts at 33948926 and ends at 33963958 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC00649   44305
Cards
Entrez_Gene (NCBI)LINC00649  100506334  long intergenic non-protein coding RNA 649
Aliases
GeneCards (Weizmann)LINC00649
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr21:33948926-33963958 [Contig_View]  LINC00649 [Vega]
TCGA cBioPortalLINC00649
AceView (NCBI)LINC00649
Genatlas (Paris)LINC00649
WikiGenes100506334
SOURCE (Princeton)LINC00649
Genetics Home Reference (NIH)LINC00649
Genomic and cartography
GoldenPath hg38 (UCSC)LINC00649  -     chr21:33948926-33963958 +  21q22.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC00649  -     21q22.11   [Description]    (hg19-Feb_2009)
EnsemblLINC00649 - 21q22.11 [CytoView hg19]  LINC00649 - 21q22.11 [CytoView hg38]
Mapping of homologs : NCBILINC00649 [Mapview hg19]  LINC00649 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK127913 AK311545 AL532366 BX102617 CD699867
RefSeq transcript (Entrez)NM_001288961 NM_207472
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC00649
Cluster EST : UnigeneHs.729814 [ NCBI ]
CGAP (NCI)Hs.729814
Gene ExpressionLINC00649 [ NCBI-GEO ]   LINC00649 [ EBI - ARRAY_EXPRESS ]   LINC00649 [ SEEK ]   LINC00649 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC00649 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100506334
GTEX Portal (Tissue expression)LINC00649
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC00649
DMDM Disease mutations100506334
Blocks (Seattle)LINC00649
Protein Interaction databases
BioGRIDLINC00649
STRING (EMBL)LINC00649
ZODIACLINC00649
Ontologies - Pathways
Huge Navigator LINC00649 [HugePedia]
snp3D : Map Gene to Disease100506334
BioCentury BCIQLINC00649
ClinGenLINC00649
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100506334
Clinical trialLINC00649
Miscellaneous
canSAR (ICR)LINC00649 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC00649
EVEXLINC00649
GoPubMedLINC00649
iHOPLINC00649
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:42:58 CET 2017

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