Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

LINC00662 (long intergenic non-protein coding RNA 662)

Identity

Other alias-
HGNC (Hugo) LINC00662
LocusID (NCBI) 148189
Atlas_Id 65570
Location 19q11  [Link to chromosome band 19q11]
Location_base_pair Starts at 27790493 and ends at 27793940 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC00662   27122
Cards
Entrez_Gene (NCBI)LINC00662  148189  long intergenic non-protein coding RNA 662
Aliases
GeneCards (Weizmann)LINC00662
Ensembl hg19 (Hinxton)ENSG00000261824 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000261824 [Gene_View]  chr19:27790493-27793940 [Contig_View]  LINC00662 [Vega]
ICGC DataPortalENSG00000261824
TCGA cBioPortalLINC00662
AceView (NCBI)LINC00662
Genatlas (Paris)LINC00662
WikiGenes148189
SOURCE (Princeton)LINC00662
Genetics Home Reference (NIH)LINC00662
Genomic and cartography
GoldenPath hg38 (UCSC)LINC00662  -     chr19:27790493-27793940 -  19q11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC00662  -     19q11   [Description]    (hg19-Feb_2009)
EnsemblLINC00662 - 19q11 [CytoView hg19]  LINC00662 - 19q11 [CytoView hg38]
Mapping of homologs : NCBILINC00662 [Mapview hg19]  LINC00662 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK055559 AK311452 BC045720
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC00662
Cluster EST : UnigeneHs.706547 [ NCBI ]
CGAP (NCI)Hs.706547
Alternative Splicing GalleryENSG00000261824
Gene ExpressionLINC00662 [ NCBI-GEO ]   LINC00662 [ EBI - ARRAY_EXPRESS ]   LINC00662 [ SEEK ]   LINC00662 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC00662 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)148189
GTEX Portal (Tissue expression)LINC00662
Human Protein AtlasENSG00000261824-LINC00662 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC00662
DMDM Disease mutations148189
Blocks (Seattle)LINC00662
Human Protein Atlas [tissue]ENSG00000261824-LINC00662 [tissue]
Protein Interaction databases
FunCoupENSG00000261824
BioGRIDLINC00662
STRING (EMBL)LINC00662
ZODIACLINC00662
Ontologies - Pathways
Huge Navigator LINC00662 [HugePedia]
snp3D : Map Gene to Disease148189
BioCentury BCIQLINC00662
ClinGenLINC00662
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD148189
Clinical trialLINC00662
Miscellaneous
canSAR (ICR)LINC00662 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC00662
EVEXLINC00662
GoPubMedLINC00662
iHOPLINC00662
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:38:52 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.