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LINC00680 (long intergenic non-protein coding RNA 680)

Identity

Other alias-
HGNC (Hugo) LINC00680
LocusID (NCBI) 106660612
Atlas_Id 77846
Location 6p11.2  [Link to chromosome band 6p11]
Location_base_pair Starts at 57945834 and ends at 57961446 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
LINC00680 (6p11.2) / GUSBP4 (6p11.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC00680   44417
Cards
Entrez_Gene (NCBI)LINC00680  106660612  long intergenic non-protein coding RNA 680
Aliases
GeneCards (Weizmann)LINC00680
Ensembl hg19 (Hinxton)ENSG00000215190 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000215190 [Gene_View]  ENSG00000215190 [Sequence]  chr6:57945834-57961446 [Contig_View]  LINC00680 [Vega]
ICGC DataPortalENSG00000215190
TCGA cBioPortalLINC00680
AceView (NCBI)LINC00680
Genatlas (Paris)LINC00680
WikiGenes106660612
SOURCE (Princeton)LINC00680
Genetics Home Reference (NIH)LINC00680
Genomic and cartography
GoldenPath hg38 (UCSC)LINC00680  -     chr6:57945834-57961446 -  6p11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC00680  -     6p11.2   [Description]    (hg19-Feb_2009)
EnsemblLINC00680 - 6p11.2 [CytoView hg19]  LINC00680 - 6p11.2 [CytoView hg38]
Mapping of homologs : NCBILINC00680 [Mapview hg19]  LINC00680 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK023611 AL162041 AL541195 BC011838 BC017330
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC00680
Cluster EST : UnigeneHs.561539 [ NCBI ]
CGAP (NCI)Hs.561539
Alternative Splicing GalleryENSG00000215190
Gene ExpressionLINC00680 [ NCBI-GEO ]   LINC00680 [ EBI - ARRAY_EXPRESS ]   LINC00680 [ SEEK ]   LINC00680 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC00680 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)106660612
GTEX Portal (Tissue expression)LINC00680
Human Protein AtlasENSG00000215190-LINC00680 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC00680
DMDM Disease mutations106660612
Blocks (Seattle)LINC00680
Human Protein Atlas [tissue]ENSG00000215190-LINC00680 [tissue]
Protein Interaction databases
FunCoupENSG00000215190
BioGRIDLINC00680
STRING (EMBL)LINC00680
ZODIACLINC00680
Ontologies - Pathways
Huge Navigator LINC00680 [HugePedia]
snp3D : Map Gene to Disease106660612
BioCentury BCIQLINC00680
ClinGenLINC00680
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD106660612
Clinical trialLINC00680
Miscellaneous
canSAR (ICR)LINC00680 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC00680
EVEXLINC00680
GoPubMedLINC00680
iHOPLINC00680
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 13:53:23 CEST 2018

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