Atlas of Genetics and Cytogenetics in Oncology and Haematology


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LINC00685 (long intergenic non-protein coding RNA 685)

Identity

Alias_namesCXYorf10
NCRNA00107
PPP2R3B-AS1
chromosome X and Y open reading frame 10
non-protein coding RNA 107
PPP2R3B antisense RNA 1 (non-protein coding)
PPP2R3B antisense RNA 1
Alias_symbol (synonym)OTTHUMT00000055574
Other alias
HGNC (Hugo) LINC00685
LocusID (NCBI) 283981
Atlas_Id 65588
Location Xp22.33  [Link to chromosome band Xp22]
Location_base_pair Starts at 319145 and ends at 321319 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC00685   27560
Cards
Entrez_Gene (NCBI)LINC00685  283981  long intergenic non-protein coding RNA 685
AliasesCXYorf10; NCRNA00107; PPP2R3B-AS1
GeneCards (Weizmann)LINC00685
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chrX:319145-321319 [Contig_View]  LINC00685 [Vega]
TCGA cBioPortalLINC00685
AceView (NCBI)LINC00685
Genatlas (Paris)LINC00685
WikiGenes283981
SOURCE (Princeton)LINC00685
Genetics Home Reference (NIH)LINC00685
Genomic and cartography
GoldenPath hg38 (UCSC)LINC00685  -     chrX:319145-321319 +  Xp22.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC00685  -     Xp22.33   [Description]    (hg19-Feb_2009)
EnsemblLINC00685 - Xp22.33 [CytoView hg19]  LINC00685 - Xp22.33 [CytoView hg38]
Mapping of homologs : NCBILINC00685 [Mapview hg19]  LINC00685 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK023454 BC041934 DA066179 DA521837
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)NC_000023 NC_000024 NC_018934 NG_034126 NT_187634
Consensus coding sequences : CCDS (NCBI)LINC00685
Cluster EST : UnigeneHs.575741 [ NCBI ]
CGAP (NCI)Hs.575741
Gene ExpressionLINC00685 [ NCBI-GEO ]   LINC00685 [ EBI - ARRAY_EXPRESS ]   LINC00685 [ SEEK ]   LINC00685 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC00685 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)283981
GTEX Portal (Tissue expression)LINC00685
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC00685
DMDM Disease mutations283981
Blocks (Seattle)LINC00685
IPIIPI00748534   
Protein Interaction databases
BioGRIDLINC00685
STRING (EMBL)LINC00685
ZODIACLINC00685
Ontologies - Pathways
Huge Navigator LINC00685 [HugePedia]
snp3D : Map Gene to Disease283981
BioCentury BCIQLINC00685
ClinGenLINC00685
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD283981
Chemical/Pharm GKB GenePA164723653
Clinical trialLINC00685
Miscellaneous
canSAR (ICR)LINC00685 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC00685
EVEXLINC00685
GoPubMedLINC00685
iHOPLINC00685
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:13:33 CEST 2017

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