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LINC00687 (long intergenic non-protein coding RNA 687)

Identity

Alias_namesC20orf61
chromosome 20 open reading frame 61
Alias_symbol (synonym)dJ1012F16.1
Other alias
HGNC (Hugo) LINC00687
LocusID (NCBI) 728450
Atlas_Id 65589
Location 20p12.2  [Link to chromosome band 20p12]
Location_base_pair Starts at 11809987 and ends at 11870715 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC00687   16194
Cards
Entrez_Gene (NCBI)LINC00687  728450  long intergenic non-protein coding RNA 687
AliasesC20orf61; dJ1012F16.1
GeneCards (Weizmann)LINC00687
Ensembl hg19 (Hinxton)ENSG00000228422 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000228422 [Gene_View]  chr20:11809987-11870715 [Contig_View]  LINC00687 [Vega]
ICGC DataPortalENSG00000228422
TCGA cBioPortalLINC00687
AceView (NCBI)LINC00687
Genatlas (Paris)LINC00687
WikiGenes728450
SOURCE (Princeton)LINC00687
Genetics Home Reference (NIH)LINC00687
Genomic and cartography
GoldenPath hg38 (UCSC)LINC00687  -     chr20:11809987-11870715 -  20p12.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC00687  -     20p12.2   [Description]    (hg19-Feb_2009)
EnsemblLINC00687 - 20p12.2 [CytoView hg19]  LINC00687 - 20p12.2 [CytoView hg38]
Mapping of homologs : NCBILINC00687 [Mapview hg19]  LINC00687 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BX092309
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC00687
Cluster EST : UnigeneHs.560990 [ NCBI ]
CGAP (NCI)Hs.560990
Alternative Splicing GalleryENSG00000228422
Gene ExpressionLINC00687 [ NCBI-GEO ]   LINC00687 [ EBI - ARRAY_EXPRESS ]   LINC00687 [ SEEK ]   LINC00687 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC00687 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)728450
GTEX Portal (Tissue expression)LINC00687
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC00687
DMDM Disease mutations728450
Blocks (Seattle)LINC00687
Human Protein AtlasENSG00000228422
IPIIPI00884991   IPI00790748   
PvoTein Interaction databases
FunCoupENSG00000228422
BioGRIDLINC00687
STRING (EMBL)LINC00687
ZODIACLINC00687
Ontologies - Pathways
Huge Navigator LINC00687 [HugePedia]
snp3D : Map Gene to Disease728450
BioCentury BCIQLINC00687
ClinGenLINC00687
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD728450
Chemical/Pharm GKB GenePA25772
Clinical trialLINC00687
Miscellaneous
canSAR (ICR)LINC00687 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC00687
EVEXLINC00687
GoPubMedLINC00687
iHOPLINC00687
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 13:13:33 CEST 2017

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