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LINC00694 (long intergenic non-protein coding RNA 694)

Identity

Other alias-
HGNC (Hugo) LINC00694
LocusID (NCBI) 102724231
Atlas_Id 78739
Location 3p21.31  [Link to chromosome band 3p21]
Location_base_pair Starts at 44421132 and ends at 44422923 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC00694   44570
Cards
Entrez_Gene (NCBI)LINC00694  102724231  long intergenic non-protein coding RNA 694
Aliases
GeneCards (Weizmann)LINC00694
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr3:44421132-44422923 [Contig_View]  LINC00694 [Vega]
TCGA cBioPortalLINC00694
AceView (NCBI)LINC00694
Genatlas (Paris)LINC00694
WikiGenes102724231
SOURCE (Princeton)LINC00694
Genetics Home Reference (NIH)LINC00694
Genomic and cartography
GoldenPath hg38 (UCSC)LINC00694  -     chr3:44421132-44422923 -  3p21.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC00694  -     3p21.31   [Description]    (hg19-Feb_2009)
EnsemblLINC00694 - 3p21.31 [CytoView hg19]  LINC00694 - 3p21.31 [CytoView hg38]
Mapping of homologs : NCBILINC00694 [Mapview hg19]  LINC00694 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA448155 BX377745 HY025704
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC00694
Cluster EST : UnigeneHs.131918 [ NCBI ]
CGAP (NCI)Hs.131918
Gene ExpressionLINC00694 [ NCBI-GEO ]   LINC00694 [ EBI - ARRAY_EXPRESS ]   LINC00694 [ SEEK ]   LINC00694 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC00694 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)102724231
GTEX Portal (Tissue expression)LINC00694
Protein : pattern, domain, 3D structure
UniProt/SwissProtP0DN24   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP0DN24  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP0DN24
Splice isoforms : SwissVarP0DN24
PhosPhoSitePlusP0DN24
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC00694
DMDM Disease mutations102724231
Blocks (Seattle)LINC00694
SuperfamilyP0DN24
Peptide AtlasP0DN24
Protein Interaction databases
DIP (DOE-UCLA)P0DN24
IntAct (EBI)P0DN24
BioGRIDLINC00694
STRING (EMBL)LINC00694
ZODIACLINC00694
Ontologies - Pathways
QuickGOP0DN24
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkLINC00694
Atlas of Cancer Signalling NetworkLINC00694
Wikipedia pathwaysLINC00694
Orthology - Evolution
OrthoDB102724231
Phylogenetic Trees/Animal Genes : TreeFamLINC00694
HOVERGENP0DN24
HOGENOMP0DN24
Homologs : HomoloGeneLINC00694
Homology/Alignments : Family Browser (UCSC)LINC00694
Gene fusions - Rearrangements
Tumor Fusion PortalLINC00694
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLINC00694 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LINC00694
dbVarLINC00694
ClinVarLINC00694
1000_GenomesLINC00694 
Exome Variant ServerLINC00694
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP102724231
Genomic Variants (DGV)LINC00694 [DGVbeta]
DECIPHERLINC00694 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLINC00694 
Mutations
ICGC Data PortalLINC00694 
TCGA Data PortalLINC00694 
Broad Tumor PortalLINC00694
OASIS PortalLINC00694 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDLINC00694
BioMutasearch LINC00694
DgiDB (Drug Gene Interaction Database)LINC00694
DoCM (Curated mutations)LINC00694 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LINC00694 (select a term)
intoGenLINC00694
Cancer3DLINC00694(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETLINC00694
MedgenLINC00694
Genetic Testing Registry LINC00694
NextProtP0DN24 [Medical]
TSGene102724231
GENETestsLINC00694
Target ValidationLINC00694
Huge Navigator LINC00694 [HugePedia]
snp3D : Map Gene to Disease102724231
BioCentury BCIQLINC00694
ClinGenLINC00694
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD102724231
Clinical trialLINC00694
Miscellaneous
canSAR (ICR)LINC00694 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC00694
EVEXLINC00694
GoPubMedLINC00694
iHOPLINC00694
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:07:51 CET 2017

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