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LINC00696 (long intergenic non-protein coding RNA 696)

Identity

Alias_namesC3orf74
chromosome 3 open reading frame 74
Other alias
HGNC (Hugo) LINC00696
LocusID (NCBI) 100128378
Atlas_Id 65595
Location 3p21.2  [Link to chromosome band 3p21]
Location_base_pair Starts at 52062094 and ends at 52065112 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC00696   34426
Cards
Entrez_Gene (NCBI)LINC00696  100128378  long intergenic non-protein coding RNA 696
AliasesC3orf74
GeneCards (Weizmann)LINC00696
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr3:52062094-52065112 [Contig_View]  LINC00696 [Vega]
TCGA cBioPortalLINC00696
AceView (NCBI)LINC00696
Genatlas (Paris)LINC00696
WikiGenes100128378
SOURCE (Princeton)LINC00696
Genetics Home Reference (NIH)LINC00696
Genomic and cartography
GoldenPath hg38 (UCSC)LINC00696  -     chr3:52062094-52065112 -  3p21.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC00696  -     3p21.2   [Description]    (hg19-Feb_2009)
EnsemblLINC00696 - 3p21.2 [CytoView hg19]  LINC00696 - 3p21.2 [CytoView hg38]
Mapping of homologs : NCBILINC00696 [Mapview hg19]  LINC00696 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK127958
RefSeq transcript (Entrez)NM_001123039
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC00696
Cluster EST : UnigeneHs.640106 [ NCBI ]
CGAP (NCI)Hs.640106
Gene ExpressionLINC00696 [ NCBI-GEO ]   LINC00696 [ EBI - ARRAY_EXPRESS ]   LINC00696 [ SEEK ]   LINC00696 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC00696 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100128378
GTEX Portal (Tissue expression)LINC00696
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6ZRV3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6ZRV3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6ZRV3
Splice isoforms : SwissVarQ6ZRV3
PhosPhoSitePlusQ6ZRV3
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC00696
DMDM Disease mutations100128378
Blocks (Seattle)LINC00696
SuperfamilyQ6ZRV3
Peptide AtlasQ6ZRV3
IPIIPI00444141   
Protein Interaction databases
DIP (DOE-UCLA)Q6ZRV3
IntAct (EBI)Q6ZRV3
BioGRIDLINC00696
STRING (EMBL)LINC00696
ZODIACLINC00696
Ontologies - Pathways
QuickGOQ6ZRV3
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkLINC00696
Atlas of Cancer Signalling NetworkLINC00696
Wikipedia pathwaysLINC00696
Orthology - Evolution
OrthoDB100128378
Phylogenetic Trees/Animal Genes : TreeFamLINC00696
HOVERGENQ6ZRV3
HOGENOMQ6ZRV3
Homologs : HomoloGeneLINC00696
Homology/Alignments : Family Browser (UCSC)LINC00696
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLINC00696 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LINC00696
dbVarLINC00696
ClinVarLINC00696
1000_GenomesLINC00696 
Exome Variant ServerLINC00696
ExAC (Exome Aggregation Consortium)LINC00696 (select the gene name)
Genetic variants : HAPMAP100128378
Genomic Variants (DGV)LINC00696 [DGVbeta]
DECIPHERLINC00696 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisLINC00696 
Mutations
ICGC Data PortalLINC00696 
TCGA Data PortalLINC00696 
Broad Tumor PortalLINC00696
OASIS PortalLINC00696 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDLINC00696
BioMutasearch LINC00696
DgiDB (Drug Gene Interaction Database)LINC00696
DoCM (Curated mutations)LINC00696 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LINC00696 (select a term)
intoGenLINC00696
Cancer3DLINC00696(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenLINC00696
Genetic Testing Registry LINC00696
NextProtQ6ZRV3 [Medical]
TSGene100128378
GENETestsLINC00696
Target ValidationLINC00696
Huge Navigator LINC00696 [HugePedia]
snp3D : Map Gene to Disease100128378
BioCentury BCIQLINC00696
ClinGenLINC00696
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100128378
Chemical/Pharm GKB GenePA164717255
Clinical trialLINC00696
Miscellaneous
canSAR (ICR)LINC00696 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC00696
EVEXLINC00696
GoPubMedLINC00696
iHOPLINC00696
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 15:57:17 CEST 2017

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