Atlas of Genetics and Cytogenetics in Oncology and Haematology


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LINC00709 (long intergenic non-protein coding RNA 709)

Identity

Alias (NCBI)-
HGNC (Hugo) LINC00709
LocusID (NCBI) 100507163
Atlas_Id 65606
Location 10p14  [Link to chromosome band 10p14]
Location_base_pair Starts at 9275613 and ends at 9287056 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

Nomenclature
HGNC (Hugo)LINC00709   44700
Cards
Entrez_Gene (NCBI)LINC00709    long intergenic non-protein coding RNA 709
Aliases
GeneCards (Weizmann)LINC00709
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]   [Sequence]  chr10:9275613-9287056 [Contig_View]  LINC00709 [Vega]
TCGA cBioPortalLINC00709
AceView (NCBI)LINC00709
Genatlas (Paris)LINC00709
SOURCE (Princeton)LINC00709
Genetics Home Reference (NIH)LINC00709
Genomic and cartography
GoldenPath hg38 (UCSC)LINC00709  -     chr10:9275613-9287056 +  10p14   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC00709  -     10p14   [Description]    (hg19-Feb_2009)
GoldenPathLINC00709 - 10p14 [CytoView hg19]  LINC00709 - 10p14 [CytoView hg38]
Genome Data Viewer NCBILINC00709 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AA846132 BX111793
RefSeq transcript (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC00709
Gene ExpressionLINC00709 [ NCBI-GEO ]   LINC00709 [ EBI - ARRAY_EXPRESS ]   LINC00709 [ SEEK ]   LINC00709 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC00709 [ Firebrowse - Broad ]
GenevisibleExpression of LINC00709 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100507163
GTEX Portal (Tissue expression)LINC00709
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC00709
Protein Interaction databases
BioGRIDLINC00709
STRING (EMBL)LINC00709
ZODIACLINC00709
Ontologies - Pathways
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXLINC00709
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Mon Oct 4 15:56:37 CEST 2021

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