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LINC00838 (long intergenic non-protein coding RNA 838)

Identity

Alias (NCBI)-
HGNC (Hugo) LINC00838
LocusID (NCBI) 100505583
Atlas_Id 65611
Location 10p11.22  [Link to chromosome band 10p11]
Location_base_pair Starts at 33759713 and ends at 33772680 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

Nomenclature
HGNC (Hugo)LINC00838   44963
Cards
Entrez_Gene (NCBI)LINC00838    long intergenic non-protein coding RNA 838
Aliases
GeneCards (Weizmann)LINC00838
Ensembl hg19 (Hinxton)ENSG00000261683 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000261683 [Gene_View]  ENSG00000261683 [Sequence]  chr10:33759713-33772680 [Contig_View]  LINC00838 [Vega]
ICGC DataPortalENSG00000261683
TCGA cBioPortalLINC00838
AceView (NCBI)LINC00838
Genatlas (Paris)LINC00838
SOURCE (Princeton)LINC00838
Genetics Home Reference (NIH)LINC00838
Genomic and cartography
GoldenPath hg38 (UCSC)LINC00838  -     chr10:33759713-33772680 -  10p11.22   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC00838  -     10p11.22   [Description]    (hg19-Feb_2009)
GoldenPathLINC00838 - 10p11.22 [CytoView hg19]  LINC00838 - 10p11.22 [CytoView hg38]
ImmunoBaseENSG00000261683
Genome Data Viewer NCBILINC00838 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)BC042457 DB078335
RefSeq transcript (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC00838
Gene ExpressionLINC00838 [ NCBI-GEO ]   LINC00838 [ EBI - ARRAY_EXPRESS ]   LINC00838 [ SEEK ]   LINC00838 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC00838 [ Firebrowse - Broad ]
GenevisibleExpression of LINC00838 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100505583
GTEX Portal (Tissue expression)LINC00838
Human Protein AtlasENSG00000261683-LINC00838 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC00838
Human Protein Atlas [tissue]ENSG00000261683-LINC00838 [tissue]
Protein Interaction databases
BioGRIDLINC00838
STRING (EMBL)LINC00838
ZODIACLINC00838
Ontologies - Pathways
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXLINC00838
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Oct 4 15:56:38 CEST 2021

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