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LINC00838 (long intergenic non-protein coding RNA 838)

Identity

Other alias-
HGNC (Hugo) LINC00838
LocusID (NCBI) 100505583
Atlas_Id 65611
Location 10p11.22  [Link to chromosome band 10p11]
Location_base_pair Starts at 34048641 and ends at 34061608 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC00838   44963
Cards
Entrez_Gene (NCBI)LINC00838  100505583  long intergenic non-protein coding RNA 838
Aliases
GeneCards (Weizmann)LINC00838
Ensembl hg19 (Hinxton)ENSG00000261683 [Gene_View]  chr10:34048641-34061608 [Contig_View]  LINC00838 [Vega]
Ensembl hg38 (Hinxton)ENSG00000261683 [Gene_View]  chr10:34048641-34061608 [Contig_View]  LINC00838 [Vega]
ICGC DataPortalENSG00000261683
TCGA cBioPortalLINC00838
AceView (NCBI)LINC00838
Genatlas (Paris)LINC00838
WikiGenes100505583
SOURCE (Princeton)LINC00838
Genetics Home Reference (NIH)LINC00838
Genomic and cartography
GoldenPath hg19 (UCSC)LINC00838  -     chr10:34048641-34061608 -  10p11.22   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)LINC00838  -     10p11.22   [Description]    (hg38-Dec_2013)
EnsemblLINC00838 - 10p11.22 [CytoView hg19]  LINC00838 - 10p11.22 [CytoView hg38]
Mapping of homologs : NCBILINC00838 [Mapview hg19]  LINC00838 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC042457 DB078335 HG502800
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)NC_000010 NC_018921 NT_008705 NW_004929370
Consensus coding sequences : CCDS (NCBI)LINC00838
Cluster EST : UnigeneHs.568804 [ NCBI ]
CGAP (NCI)Hs.568804
Alternative Splicing GalleryENSG00000261683
Gene ExpressionLINC00838 [ NCBI-GEO ]   LINC00838 [ EBI - ARRAY_EXPRESS ]   LINC00838 [ SEEK ]   LINC00838 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC00838 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100505583
GTEX Portal (Tissue expression)LINC00838
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC00838
DMDM Disease mutations100505583
Blocks (Seattle)LINC00838
Human Protein AtlasENSG00000261683
Protein Interaction databases
FunCoupENSG00000261683
BioGRIDLINC00838
STRING (EMBL)LINC00838
ZODIACLINC00838
Ontologies - Pathways
Huge Navigator LINC00838 [HugePedia]
snp3D : Map Gene to Disease100505583
BioCentury BCIQLINC00838
ClinGenLINC00838
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100505583
Clinical trialLINC00838
Miscellaneous
canSAR (ICR)LINC00838 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC00838
EVEXLINC00838
GoPubMedLINC00838
iHOPLINC00838
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:12:24 CET 2017

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