Atlas of Genetics and Cytogenetics in Oncology and Haematology

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LINC00838 (long intergenic non-protein coding RNA 838)


Alias (NCBI)-
HGNC (Hugo) LINC00838
LocusID (NCBI) 100505583
Atlas_Id 65611
Location 10p11.22  [Link to chromosome band 10p11]
Location_base_pair Starts at 33759713 and ends at 33772680 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)


Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute



External links

HGNC (Hugo)LINC00838   44963
Entrez_Gene (NCBI)LINC00838    long intergenic non-protein coding RNA 838
GeneCards (Weizmann)LINC00838
Ensembl hg19 (Hinxton)ENSG00000261683 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000261683 [Gene_View]  ENSG00000261683 [Sequence]  chr10:33759713-33772680 [Contig_View]  LINC00838 [Vega]
ICGC DataPortalENSG00000261683
TCGA cBioPortalLINC00838
AceView (NCBI)LINC00838
Genatlas (Paris)LINC00838
SOURCE (Princeton)LINC00838
Genetics Home Reference (NIH)LINC00838
Genomic and cartography
GoldenPath hg38 (UCSC)LINC00838  -     chr10:33759713-33772680 -  10p11.22   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC00838  -     10p11.22   [Description]    (hg19-Feb_2009)
GoldenPathLINC00838 - 10p11.22 [CytoView hg19]  LINC00838 - 10p11.22 [CytoView hg38]
Genome Data Viewer NCBILINC00838 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)BC042457 DB078335
RefSeq transcript (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC00838
Gene ExpressionLINC00838 [ NCBI-GEO ]   LINC00838 [ EBI - ARRAY_EXPRESS ]   LINC00838 [ SEEK ]   LINC00838 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC00838 [ Firebrowse - Broad ]
GenevisibleExpression of LINC00838 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100505583
GTEX Portal (Tissue expression)LINC00838
Human Protein AtlasENSG00000261683-LINC00838 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC00838
Human Protein Atlas [tissue]ENSG00000261683-LINC00838 [tissue]
Protein Interaction databases
Ontologies - Pathways
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:56:38 CEST 2021

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