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LINC00840 (long intergenic non-protein coding RNA 840)

Identity

Alias (NCBI)-
HGNC (Hugo) LINC00840
LocusID (NCBI) 100506835
Atlas_Id 65612
Location 10q11.21  [Link to chromosome band 10q11]
Location_base_pair Starts at 43859411 and ends at 43895433 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

Nomenclature
HGNC (Hugo)LINC00840   44987
Cards
Entrez_Gene (NCBI)LINC00840    long intergenic non-protein coding RNA 840
Aliases
GeneCards (Weizmann)LINC00840
Ensembl hg19 (Hinxton)ENSG00000226808 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000226808 [Gene_View]  ENSG00000226808 [Sequence]  chr10:43859411-43895433 [Contig_View]  LINC00840 [Vega]
ICGC DataPortalENSG00000226808
TCGA cBioPortalLINC00840
AceView (NCBI)LINC00840
Genatlas (Paris)LINC00840
SOURCE (Princeton)LINC00840
Genetics Home Reference (NIH)LINC00840
Genomic and cartography
GoldenPath hg38 (UCSC)LINC00840  -     chr10:43859411-43895433 +  10q11.21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC00840  -     10q11.21   [Description]    (hg19-Feb_2009)
GoldenPathLINC00840 - 10q11.21 [CytoView hg19]  LINC00840 - 10q11.21 [CytoView hg38]
ImmunoBaseENSG00000226808
Genome Data Viewer NCBILINC00840 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AK054825
RefSeq transcript (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC00840
Gene ExpressionLINC00840 [ NCBI-GEO ]   LINC00840 [ EBI - ARRAY_EXPRESS ]   LINC00840 [ SEEK ]   LINC00840 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC00840 [ Firebrowse - Broad ]
GenevisibleExpression of LINC00840 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100506835
GTEX Portal (Tissue expression)LINC00840
Human Protein AtlasENSG00000226808-LINC00840 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC00840
Human Protein Atlas [tissue]ENSG00000226808-LINC00840 [tissue]
Protein Interaction databases
BioGRIDLINC00840
STRING (EMBL)LINC00840
ZODIACLINC00840
Ontologies - Pathways
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXLINC00840
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Oct 4 15:56:38 CEST 2021

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