Atlas of Genetics and Cytogenetics in Oncology and Haematology

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LINC00842 (long intergenic non-protein coding RNA 842)


Alias (NCBI)-
HGNC (Hugo) LINC00842
LocusID (NCBI) 643650
Atlas_Id 65614
Location 10q11.22  [Link to chromosome band 10q11]
Location_base_pair Starts at 46398362 and ends at 46453306 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)


Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute



External links

HGNC (Hugo)LINC00842   44989
Entrez_Gene (NCBI)LINC00842    long intergenic non-protein coding RNA 842
GeneCards (Weizmann)LINC00842
Ensembl hg19 (Hinxton)ENSG00000285294 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000285294 [Gene_View]  ENSG00000285294 [Sequence]  chr10:46398362-46453306 [Contig_View]  LINC00842 [Vega]
ICGC DataPortalENSG00000285294
TCGA cBioPortalLINC00842
AceView (NCBI)LINC00842
Genatlas (Paris)LINC00842
SOURCE (Princeton)LINC00842
Genetics Home Reference (NIH)LINC00842
Genomic and cartography
GoldenPath hg38 (UCSC)LINC00842  -     chr10:46398362-46453306 +  10q11.22   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC00842  -     10q11.22   [Description]    (hg19-Feb_2009)
GoldenPathLINC00842 - 10q11.22 [CytoView hg19]  LINC00842 - 10q11.22 [CytoView hg38]
Genome Data Viewer NCBILINC00842 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)BC033221 OA985728 OA985729
RefSeq transcript (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC00842
Gene ExpressionLINC00842 [ NCBI-GEO ]   LINC00842 [ EBI - ARRAY_EXPRESS ]   LINC00842 [ SEEK ]   LINC00842 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC00842 [ Firebrowse - Broad ]
GenevisibleExpression of LINC00842 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)643650
GTEX Portal (Tissue expression)LINC00842
Human Protein AtlasENSG00000285294-LINC00842 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC00842
Human Protein Atlas [tissue]ENSG00000285294-LINC00842 [tissue]
Protein Interaction databases
Ontologies - Pathways
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Oct 4 15:56:39 CEST 2021

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