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LINC00842 (long intergenic non-protein coding RNA 842)

Identity

Other alias-
HGNC (Hugo) LINC00842
LocusID (NCBI) 643650
Atlas_Id 65614
Location 10q11.22  [Link to chromosome band 10q11]
Location_base_pair Starts at 47096454 and ends at 47151400 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC00842   44989
Cards
Entrez_Gene (NCBI)LINC00842  643650  long intergenic non-protein coding RNA 842
Aliases
GeneCards (Weizmann)LINC00842
Ensembl hg19 (Hinxton)ENSG00000264230 [Gene_View]  chr10:47096454-47151400 [Contig_View]  LINC00842 [Vega]
Ensembl hg38 (Hinxton)ENSG00000264230 [Gene_View]  chr10:47096454-47151400 [Contig_View]  LINC00842 [Vega]
ICGC DataPortalENSG00000264230
TCGA cBioPortalLINC00842
AceView (NCBI)LINC00842
Genatlas (Paris)LINC00842
WikiGenes643650
SOURCE (Princeton)LINC00842
Genetics Home Reference (NIH)LINC00842
Genomic and cartography
GoldenPath hg19 (UCSC)LINC00842  -     chr10:47096454-47151400 -  10q11.22   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)LINC00842  -     10q11.22   [Description]    (hg38-Dec_2013)
EnsemblLINC00842 - 10q11.22 [CytoView hg19]  LINC00842 - 10q11.22 [CytoView hg38]
Mapping of homologs : NCBILINC00842 [Mapview hg19]  LINC00842 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC033221
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)NC_000010 NC_018921 NT_030059 NW_004929373
Consensus coding sequences : CCDS (NCBI)LINC00842
Cluster EST : UnigeneHs.744313 [ NCBI ]
CGAP (NCI)Hs.744313
Alternative Splicing GalleryENSG00000264230
Gene ExpressionLINC00842 [ NCBI-GEO ]   LINC00842 [ EBI - ARRAY_EXPRESS ]   LINC00842 [ SEEK ]   LINC00842 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC00842 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)643650
GTEX Portal (Tissue expression)LINC00842
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC00842
DMDM Disease mutations643650
Blocks (Seattle)LINC00842
Human Protein AtlasENSG00000264230
IPIIPI00877889   
Protein Interaction databases
FunCoupENSG00000264230
BioGRIDLINC00842
STRING (EMBL)LINC00842
ZODIACLINC00842
Ontologies - Pathways
Huge Navigator LINC00842 [HugePedia]
snp3D : Map Gene to Disease643650
BioCentury BCIQLINC00842
ClinGenLINC00842
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD643650
Clinical trialLINC00842
Miscellaneous
canSAR (ICR)LINC00842 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC00842
EVEXLINC00842
GoPubMedLINC00842
iHOPLINC00842
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:12:25 CET 2017

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