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LINC00845 (long intergenic non-protein coding RNA 845)

Identity

Other alias-
HGNC (Hugo) LINC00845
LocusID (NCBI) 100507058
Atlas_Id 65616
Location 10q21.2  [Link to chromosome band 10q21]
Location_base_pair Starts at 61016275 and ends at 61026417 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC00845   45033
Cards
Entrez_Gene (NCBI)LINC00845  100507058  long intergenic non-protein coding RNA 845
Aliases
GeneCards (Weizmann)LINC00845
Ensembl hg19 (Hinxton)ENSG00000227244 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000227244 [Gene_View]  chr10:61016275-61026417 [Contig_View]  LINC00845 [Vega]
ICGC DataPortalENSG00000227244
TCGA cBioPortalLINC00845
AceView (NCBI)LINC00845
Genatlas (Paris)LINC00845
WikiGenes100507058
SOURCE (Princeton)LINC00845
Genetics Home Reference (NIH)LINC00845
Genomic and cartography
GoldenPath hg38 (UCSC)LINC00845  -     chr10:61016275-61026417 +  10q21.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC00845  -     10q21.2   [Description]    (hg19-Feb_2009)
EnsemblLINC00845 - 10q21.2 [CytoView hg19]  LINC00845 - 10q21.2 [CytoView hg38]
Mapping of homologs : NCBILINC00845 [Mapview hg19]  LINC00845 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI792470 AW000921
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC00845
Cluster EST : UnigeneHs.145227 [ NCBI ]
CGAP (NCI)Hs.145227
Alternative Splicing GalleryENSG00000227244
Gene ExpressionLINC00845 [ NCBI-GEO ]   LINC00845 [ EBI - ARRAY_EXPRESS ]   LINC00845 [ SEEK ]   LINC00845 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC00845 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100507058
GTEX Portal (Tissue expression)LINC00845
Human Protein AtlasENSG00000227244-LINC00845 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC00845
DMDM Disease mutations100507058
Blocks (Seattle)LINC00845
Human Protein Atlas [tissue]ENSG00000227244-LINC00845 [tissue]
Protein Interaction databases
FunCoupENSG00000227244
BioGRIDLINC00845
STRING (EMBL)LINC00845
ZODIACLINC00845
Ontologies - Pathways
Huge Navigator LINC00845 [HugePedia]
snp3D : Map Gene to Disease100507058
BioCentury BCIQLINC00845
ClinGenLINC00845
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100507058
Clinical trialLINC00845
Miscellaneous
canSAR (ICR)LINC00845 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC00845
EVEXLINC00845
GoPubMedLINC00845
iHOPLINC00845
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 11:54:55 CET 2017

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