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LINC00853 (long intergenic non-protein coding RNA 853)

Identity

Alias_namesPDZK1IP1-AS1
PDZK1IP1 antisense RNA 1 (non-protein coding)
PDZK1IP1 antisense RNA 1 (tail to tail)
Alias_symbol (synonym)ncRNA-a4
Other alias
HGNC (Hugo) LINC00853
LocusID (NCBI) 100874253
Atlas_Id 65622
Location 1p33  [Link to chromosome band 1p33]
Location_base_pair Starts at 47179250 and ends at 47180339 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC00853   43716
Cards
Entrez_Gene (NCBI)LINC00853  100874253  long intergenic non-protein coding RNA 853
AliasesPDZK1IP1-AS1; ncRNA-a4
GeneCards (Weizmann)LINC00853
Ensembl hg19 (Hinxton)ENSG00000224805 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000224805 [Gene_View]  chr1:47179250-47180339 [Contig_View]  LINC00853 [Vega]
ICGC DataPortalENSG00000224805
TCGA cBioPortalLINC00853
AceView (NCBI)LINC00853
Genatlas (Paris)LINC00853
WikiGenes100874253
SOURCE (Princeton)LINC00853
Genetics Home Reference (NIH)LINC00853
Genomic and cartography
GoldenPath hg38 (UCSC)LINC00853  -     chr1:47179250-47180339 +  1p33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC00853  -     1p33   [Description]    (hg19-Feb_2009)
EnsemblLINC00853 - 1p33 [CytoView hg19]  LINC00853 - 1p33 [CytoView hg38]
Mapping of homologs : NCBILINC00853 [Mapview hg19]  LINC00853 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI651041 AI792909
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC00853
Cluster EST : UnigeneHs.435758 [ NCBI ]
CGAP (NCI)Hs.435758
Alternative Splicing GalleryENSG00000224805
Gene ExpressionLINC00853 [ NCBI-GEO ]   LINC00853 [ EBI - ARRAY_EXPRESS ]   LINC00853 [ SEEK ]   LINC00853 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC00853 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100874253
GTEX Portal (Tissue expression)LINC00853
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC00853
DMDM Disease mutations100874253
Blocks (Seattle)LINC00853
Human Protein AtlasENSG00000224805
Protein Interaction databases
FunCoupENSG00000224805
BioGRIDLINC00853
STRING (EMBL)LINC00853
ZODIACLINC00853
Ontologies - Pathways
Huge Navigator LINC00853 [HugePedia]
snp3D : Map Gene to Disease100874253
BioCentury BCIQLINC00853
ClinGenLINC00853
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100874253
Clinical trialLINC00853
Miscellaneous
canSAR (ICR)LINC00853 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC00853
EVEXLINC00853
GoPubMedLINC00853
iHOPLINC00853
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 15:57:24 CEST 2017

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