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LINC00854 (long intergenic non-protein coding RNA 854)

Identity

Alias_namesTMEM106A-AS1
TMEM106A antisense RNA 1 (non-protein coding)
TMEM106A antisense RNA 1
TMEM106A antisense RNA 1 (tail to tail)
Other alias
HGNC (Hugo) LINC00854
LocusID (NCBI) 100874261
Atlas_Id 65623
Location 17q21.31  [Link to chromosome band 17q21]
Location_base_pair Starts at 43221417 and ends at 43229011 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC00854   43658
Cards
Entrez_Gene (NCBI)LINC00854  100874261  long intergenic non-protein coding RNA 854
AliasesTMEM106A-AS1
GeneCards (Weizmann)LINC00854
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr17:43221417-43229011 [Contig_View]  LINC00854 [Vega]
TCGA cBioPortalLINC00854
AceView (NCBI)LINC00854
Genatlas (Paris)LINC00854
WikiGenes100874261
SOURCE (Princeton)LINC00854
Genetics Home Reference (NIH)LINC00854
Genomic and cartography
GoldenPath hg38 (UCSC)LINC00854  -     chr17:43221417-43229011 -  17q21.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC00854  -     17q21.31   [Description]    (hg19-Feb_2009)
EnsemblLINC00854 - 17q21.31 [CytoView hg19]  LINC00854 - 17q21.31 [CytoView hg38]
Mapping of homologs : NCBILINC00854 [Mapview hg19]  LINC00854 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC073918
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC00854
Cluster EST : UnigeneHs.546898 [ NCBI ]
CGAP (NCI)Hs.546898
Gene ExpressionLINC00854 [ NCBI-GEO ]   LINC00854 [ EBI - ARRAY_EXPRESS ]   LINC00854 [ SEEK ]   LINC00854 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC00854 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100874261
GTEX Portal (Tissue expression)LINC00854
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC00854
DMDM Disease mutations100874261
Blocks (Seattle)LINC00854
Protein Interaction databases
BioGRIDLINC00854
STRING (EMBL)LINC00854
ZODIACLINC00854
Ontologies - Pathways
Huge Navigator LINC00854 [HugePedia]
snp3D : Map Gene to Disease100874261
BioCentury BCIQLINC00854
ClinGenLINC00854
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100874261
Clinical trialLINC00854
Miscellaneous
canSAR (ICR)LINC00854 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC00854
EVEXLINC00854
GoPubMedLINC00854
iHOPLINC00854
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 15:57:24 CEST 2017

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