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LINC00858 (long intergenic non-protein coding RNA 858)

Identity

Alias (NCBI)CRCAL-2
HGNC (Hugo) LINC00858
HGNC Alias symbCRCAL-2
HGNC Alias namecolorectal cancer associated lncRNA
LocusID (NCBI) 170425
Atlas_Id 57300
Location 10q23.1  [Link to chromosome band 10q23]
Location_base_pair Starts at 84279980 and ends at 84294659 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

Nomenclature
HGNC (Hugo)LINC00858   27276
Cards
Entrez_Gene (NCBI)LINC00858    long intergenic non-protein coding RNA 858
AliasesCRCAL-2
GeneCards (Weizmann)LINC00858
Ensembl hg19 (Hinxton)ENSG00000229404 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000229404 [Gene_View]  ENSG00000229404 [Sequence]  chr10:84279980-84294659 [Contig_View]  LINC00858 [Vega]
ICGC DataPortalENSG00000229404
TCGA cBioPortalLINC00858
AceView (NCBI)LINC00858
Genatlas (Paris)LINC00858
SOURCE (Princeton)LINC00858
Genetics Home Reference (NIH)LINC00858
Genomic and cartography
GoldenPath hg38 (UCSC)LINC00858  -     chr10:84279980-84294659 +  10q23.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC00858  -     10q23.1   [Description]    (hg19-Feb_2009)
GoldenPathLINC00858 - 10q23.1 [CytoView hg19]  LINC00858 - 10q23.1 [CytoView hg38]
ImmunoBaseENSG00000229404
Genome Data Viewer NCBILINC00858 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AK056561 BC104895 BC104921 MK692948
RefSeq transcript (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC00858
Gene ExpressionLINC00858 [ NCBI-GEO ]   LINC00858 [ EBI - ARRAY_EXPRESS ]   LINC00858 [ SEEK ]   LINC00858 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC00858 [ Firebrowse - Broad ]
GenevisibleExpression of LINC00858 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)170425
GTEX Portal (Tissue expression)LINC00858
Human Protein AtlasENSG00000229404-LINC00858 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC00858
Human Protein Atlas [tissue]ENSG00000229404-LINC00858 [tissue]
Protein Interaction databases
BioGRIDLINC00858
STRING (EMBL)LINC00858
ZODIACLINC00858
Ontologies - Pathways
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXLINC00858
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Oct 4 15:16:09 CEST 2021

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