Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

LINC00858 (long intergenic non-protein coding RNA 858)

Identity

Other alias-
HGNC (Hugo) LINC00858
LocusID (NCBI) 170425
Atlas_Id 65626
Location 10q23.1  [Link to chromosome band 10q23]
Location_base_pair Starts at 84279980 and ends at 84294659 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC00858   27276
Cards
Entrez_Gene (NCBI)LINC00858  170425  long intergenic non-protein coding RNA 858
Aliases
GeneCards (Weizmann)LINC00858
Ensembl hg19 (Hinxton)ENSG00000229404 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000229404 [Gene_View]  chr10:84279980-84294659 [Contig_View]  LINC00858 [Vega]
ICGC DataPortalENSG00000229404
TCGA cBioPortalLINC00858
AceView (NCBI)LINC00858
Genatlas (Paris)LINC00858
WikiGenes170425
SOURCE (Princeton)LINC00858
Genetics Home Reference (NIH)LINC00858
Genomic and cartography
GoldenPath hg38 (UCSC)LINC00858  -     chr10:84279980-84294659 +  10q23.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC00858  -     10q23.1   [Description]    (hg19-Feb_2009)
EnsemblLINC00858 - 10q23.1 [CytoView hg19]  LINC00858 - 10q23.1 [CytoView hg38]
Mapping of homologs : NCBILINC00858 [Mapview hg19]  LINC00858 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK056561 BC104895 BC104921
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC00858
Cluster EST : UnigeneHs.434131 [ NCBI ]
CGAP (NCI)Hs.434131
Alternative Splicing GalleryENSG00000229404
Gene ExpressionLINC00858 [ NCBI-GEO ]   LINC00858 [ EBI - ARRAY_EXPRESS ]   LINC00858 [ SEEK ]   LINC00858 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC00858 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)170425
GTEX Portal (Tissue expression)LINC00858
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC00858
DMDM Disease mutations170425
Blocks (Seattle)LINC00858
Human Protein AtlasENSG00000229404
Protein Interaction databases
FunCoupENSG00000229404
BioGRIDLINC00858
STRING (EMBL)LINC00858
ZODIACLINC00858
Ontologies - Pathways
Huge Navigator LINC00858 [HugePedia]
snp3D : Map Gene to Disease170425
BioCentury BCIQLINC00858
ClinGenLINC00858
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD170425
Clinical trialLINC00858
Miscellaneous
canSAR (ICR)LINC00858 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC00858
EVEXLINC00858
GoPubMedLINC00858
iHOPLINC00858
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri May 19 11:21:05 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.