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LINC00869 (long intergenic non-protein coding RNA 869)

Identity

Alias_symbol (synonym)KIAA0493
Other aliasFAM91A2
HGNC (Hugo) LINC00869
LocusID (NCBI) 57234
Atlas_Id 65635
Location 1q21.2  [Link to chromosome band 1q21]
Location_base_pair Starts at 149576161 and ends at 149651107 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC00869   29050
Cards
Entrez_Gene (NCBI)LINC00869  57234  long intergenic non-protein coding RNA 869
AliasesFAM91A2
GeneCards (Weizmann)LINC00869
Ensembl hg19 (Hinxton)ENSG00000277147 [Gene_View]  chr1:149576161-149651107 [Contig_View]  LINC00869 [Vega]
Ensembl hg38 (Hinxton)ENSG00000277147 [Gene_View]  chr1:149576161-149651107 [Contig_View]  LINC00869 [Vega]
ICGC DataPortalENSG00000277147
TCGA cBioPortalLINC00869
AceView (NCBI)LINC00869
Genatlas (Paris)LINC00869
WikiGenes57234
SOURCE (Princeton)LINC00869
Genetics Home Reference (NIH)LINC00869
Genomic and cartography
GoldenPath hg19 (UCSC)LINC00869  -     chr1:149576161-149651107 +  1q21.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)LINC00869  -     1q21.2   [Description]    (hg38-Dec_2013)
EnsemblLINC00869 - 1q21.2 [CytoView hg19]  LINC00869 - 1q21.2 [CytoView hg38]
Mapping of homologs : NCBILINC00869 [Mapview hg19]  LINC00869 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB007962 AK090660 BC061517 BC073170 BU602007
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)NC_000001 NC_018912 NT_004487 NW_004929293
Consensus coding sequences : CCDS (NCBI)LINC00869
Cluster EST : UnigeneHs.662922 [ NCBI ]
CGAP (NCI)Hs.662922
Alternative Splicing GalleryENSG00000277147
Gene ExpressionLINC00869 [ NCBI-GEO ]   LINC00869 [ EBI - ARRAY_EXPRESS ]   LINC00869 [ SEEK ]   LINC00869 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC00869 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)57234
GTEX Portal (Tissue expression)LINC00869
Protein : pattern, domain, 3D structure
UniProt/SwissProtP0C866   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP0C866  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP0C866
Splice isoforms : SwissVarP0C866
PhosPhoSitePlusP0C866
Domains : Interpro (EBI)FAM91_C_dom   
Domain families : Pfam (Sanger)FAM91_C (PF14648)   
Domain families : Pfam (NCBI)pfam14648   
Conserved Domain (NCBI)LINC00869
DMDM Disease mutations57234
Blocks (Seattle)LINC00869
SuperfamilyP0C866
Human Protein AtlasENSG00000277147
Peptide AtlasP0C866
IPIIPI00736641   
Protein Interaction databases
DIP (DOE-UCLA)P0C866
IntAct (EBI)P0C866
FunCoupENSG00000277147
BioGRIDLINC00869
STRING (EMBL)LINC00869
ZODIACLINC00869
Ontologies - Pathways
QuickGOP0C866
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkLINC00869
Atlas of Cancer Signalling NetworkLINC00869
Wikipedia pathwaysLINC00869
Orthology - Evolution
OrthoDB57234
GeneTree (enSembl)ENSG00000277147
Phylogenetic Trees/Animal Genes : TreeFamLINC00869
HOVERGENP0C866
HOGENOMP0C866
Homologs : HomoloGeneLINC00869
Homology/Alignments : Family Browser (UCSC)LINC00869
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerLINC00869 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)LINC00869
dbVarLINC00869
ClinVarLINC00869
1000_GenomesLINC00869 
Exome Variant ServerLINC00869
ExAC (Exome Aggregation Consortium)LINC00869 (select the gene name)
Genetic variants : HAPMAP57234
Genomic Variants (DGV)LINC00869 [DGVbeta]
DECIPHER (Syndromes)1:149576161-149651107  ENSG00000277147
CONAN: Copy Number AnalysisLINC00869 
Mutations
ICGC Data PortalLINC00869 
TCGA Data PortalLINC00869 
Broad Tumor PortalLINC00869
OASIS PortalLINC00869 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDLINC00869
BioMutasearch LINC00869
DgiDB (Drug Gene Interaction Database)LINC00869
DoCM (Curated mutations)LINC00869 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)LINC00869 (select a term)
intoGenLINC00869
Cancer3DLINC00869(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenLINC00869
Genetic Testing Registry LINC00869
NextProtP0C866 [Medical]
TSGene57234
GENETestsLINC00869
Huge Navigator LINC00869 [HugePedia]
snp3D : Map Gene to Disease57234
BioCentury BCIQLINC00869
ClinGenLINC00869
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD57234
Chemical/Pharm GKB GenePA142671821
Clinical trialLINC00869
Miscellaneous
canSAR (ICR)LINC00869 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC00869
EVEXLINC00869
GoPubMedLINC00869
iHOPLINC00869
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:12:29 CET 2017

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