Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

LINC00871 (long intergenic non-protein coding RNA 871)

Identity

Alias_symbol (synonym)RP11-1A16.1
Other alias-
HGNC (Hugo) LINC00871
LocusID (NCBI) 100506412
Atlas_Id 65637
Location 14q21.2  [Link to chromosome band 14q21]
Location_base_pair Starts at 46471359 and ends at 46501901 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC00871   47038
Cards
Entrez_Gene (NCBI)LINC00871  100506412  long intergenic non-protein coding RNA 871
Aliases
GeneCards (Weizmann)LINC00871
Ensembl hg19 (Hinxton)ENSG00000258700 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000258700 [Gene_View]  chr14:46471359-46501901 [Contig_View]  LINC00871 [Vega]
ICGC DataPortalENSG00000258700
TCGA cBioPortalLINC00871
AceView (NCBI)LINC00871
Genatlas (Paris)LINC00871
WikiGenes100506412
SOURCE (Princeton)LINC00871
Genetics Home Reference (NIH)LINC00871
Genomic and cartography
GoldenPath hg38 (UCSC)LINC00871  -     chr14:46471359-46501901 +  14q21.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC00871  -     14q21.2   [Description]    (hg19-Feb_2009)
EnsemblLINC00871 - 14q21.2 [CytoView hg19]  LINC00871 - 14q21.2 [CytoView hg38]
Mapping of homologs : NCBILINC00871 [Mapview hg19]  LINC00871 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BG186771 BG188315 BM725328 BU194844 BX092746
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC00871
Cluster EST : UnigeneHs.207545 [ NCBI ]
CGAP (NCI)Hs.207545
Alternative Splicing GalleryENSG00000258700
Gene ExpressionLINC00871 [ NCBI-GEO ]   LINC00871 [ EBI - ARRAY_EXPRESS ]   LINC00871 [ SEEK ]   LINC00871 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC00871 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100506412
GTEX Portal (Tissue expression)LINC00871
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC00871
DMDM Disease mutations100506412
Blocks (Seattle)LINC00871
Human Protein AtlasENSG00000258700
Protein Interaction databases
FunCoupENSG00000258700
BioGRIDLINC00871
STRING (EMBL)LINC00871
ZODIACLINC00871
Ontologies - Pathways
Huge Navigator LINC00871 [HugePedia]
snp3D : Map Gene to Disease100506412
BioCentury BCIQLINC00871
ClinGenLINC00871
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100506412
Clinical trialLINC00871
Miscellaneous
canSAR (ICR)LINC00871 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC00871
EVEXLINC00871
GoPubMedLINC00871
iHOPLINC00871
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 15:57:28 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.