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LINC00880 (long intergenic non-protein coding RNA 880)

Identity

Other alias-
HGNC (Hugo) LINC00880
LocusID (NCBI) 339894
Atlas_Id 65640
Location 3q25.31  [Link to chromosome band 3q25]
Location_base_pair Starts at 156799456 and ends at 156840791 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC00880   27948
Cards
Entrez_Gene (NCBI)LINC00880  339894  long intergenic non-protein coding RNA 880
Aliases
GeneCards (Weizmann)LINC00880
Ensembl hg19 (Hinxton)ENSG00000243629 [Gene_View]  chr3:156799456-156840791 [Contig_View]  LINC00880 [Vega]
Ensembl hg38 (Hinxton)ENSG00000243629 [Gene_View]  chr3:156799456-156840791 [Contig_View]  LINC00880 [Vega]
ICGC DataPortalENSG00000243629
TCGA cBioPortalLINC00880
AceView (NCBI)LINC00880
Genatlas (Paris)LINC00880
WikiGenes339894
SOURCE (Princeton)LINC00880
Genetics Home Reference (NIH)LINC00880
Genomic and cartography
GoldenPath hg19 (UCSC)LINC00880  -     chr3:156799456-156840791 -  3q25.31   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)LINC00880  -     3q25.31   [Description]    (hg38-Dec_2013)
EnsemblLINC00880 - 3q25.31 [CytoView hg19]  LINC00880 - 3q25.31 [CytoView hg38]
Mapping of homologs : NCBILINC00880 [Mapview hg19]  LINC00880 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK311218 BC040669 BC122546 HG496226
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)NC_000003 NC_018914 NT_005612 NW_004929311
Consensus coding sequences : CCDS (NCBI)LINC00880
Cluster EST : UnigeneHs.478050 [ NCBI ]
CGAP (NCI)Hs.478050
Alternative Splicing GalleryENSG00000243629
Gene ExpressionLINC00880 [ NCBI-GEO ]   LINC00880 [ EBI - ARRAY_EXPRESS ]   LINC00880 [ SEEK ]   LINC00880 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC00880 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)339894
GTEX Portal (Tissue expression)LINC00880
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC00880
DMDM Disease mutations339894
Blocks (Seattle)LINC00880
Human Protein AtlasENSG00000243629
Protein Interaction databases
FunCoupENSG00000243629
BioGRIDLINC00880
STRING (EMBL)LINC00880
ZODIACLINC00880
Ontologies - Pathways
Huge Navigator LINC00880 [HugePedia]
snp3D : Map Gene to Disease339894
BioCentury BCIQLINC00880
ClinGenLINC00880
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD339894
Clinical trialLINC00880
Miscellaneous
canSAR (ICR)LINC00880 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC00880
EVEXLINC00880
GoPubMedLINC00880
iHOPLINC00880
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:12:30 CET 2017

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