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LINC00885 (long intergenic non-protein coding RNA 885)

Identity

Other alias-
HGNC (Hugo) LINC00885
LocusID (NCBI) 401109
Atlas_Id 65645
Location 3q29  [Link to chromosome band 3q29]
Location_base_pair Starts at 195869507 and ends at 195887761 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC00885   48571
Cards
Entrez_Gene (NCBI)LINC00885  401109  long intergenic non-protein coding RNA 885
Aliases
GeneCards (Weizmann)LINC00885
Ensembl hg19 (Hinxton)ENSG00000224652 [Gene_View]  chr3:195869507-195887761 [Contig_View]  LINC00885 [Vega]
Ensembl hg38 (Hinxton)ENSG00000224652 [Gene_View]  chr3:195869507-195887761 [Contig_View]  LINC00885 [Vega]
ICGC DataPortalENSG00000224652
TCGA cBioPortalLINC00885
AceView (NCBI)LINC00885
Genatlas (Paris)LINC00885
WikiGenes401109
SOURCE (Princeton)LINC00885
Genetics Home Reference (NIH)LINC00885
Genomic and cartography
GoldenPath hg19 (UCSC)LINC00885  -     chr3:195869507-195887761 +  3q29   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)LINC00885  -     3q29   [Description]    (hg38-Dec_2013)
EnsemblLINC00885 - 3q29 [CytoView hg19]  LINC00885 - 3q29 [CytoView hg38]
Mapping of homologs : NCBILINC00885 [Mapview hg19]  LINC00885 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK129507 BC144578 BC144579 BC144580 BC151150
RefSeq transcript (Entrez)NM_001001699
RefSeq genomic (Entrez)NC_000003 NC_018914 NT_005612 NW_004929312
Consensus coding sequences : CCDS (NCBI)LINC00885
Cluster EST : UnigeneHs.280133 [ NCBI ]
CGAP (NCI)Hs.280133
Alternative Splicing GalleryENSG00000224652
Gene ExpressionLINC00885 [ NCBI-GEO ]   LINC00885 [ EBI - ARRAY_EXPRESS ]   LINC00885 [ SEEK ]   LINC00885 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC00885 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)401109
GTEX Portal (Tissue expression)LINC00885
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC00885
DMDM Disease mutations401109
Blocks (Seattle)LINC00885
Human Protein AtlasENSG00000224652
HPRD16924
IPIIPI00418670   
Protein Interaction databases
FunCoupENSG00000224652
BioGRIDLINC00885
STRING (EMBL)LINC00885
ZODIACLINC00885
Ontologies - Pathways
Huge Navigator LINC00885 [HugePedia]
snp3D : Map Gene to Disease401109
BioCentury BCIQLINC00885
ClinGenLINC00885
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD401109
Clinical trialLINC00885
Miscellaneous
canSAR (ICR)LINC00885 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC00885
EVEXLINC00885
GoPubMedLINC00885
iHOPLINC00885
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:12:31 CET 2017

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