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LINC00887 (long intergenic non-protein coding RNA 887)

Identity

Alias_symbol (synonym)linc-ATP13A4-8
Other aliasHEIRCC
HGNC (Hugo) LINC00887
LocusID (NCBI) 100131551
Atlas_Id 65647
Location 3q29  [Link to chromosome band 3q29]
Location_base_pair Starts at 194301200 and ends at 194312804 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)LINC00887   48574
Cards
Entrez_Gene (NCBI)LINC00887  100131551  long intergenic non-protein coding RNA 887
AliasesHEIRCC
GeneCards (Weizmann)LINC00887
Ensembl hg19 (Hinxton)ENSG00000214145 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000214145 [Gene_View]  chr3:194301200-194312804 [Contig_View]  LINC00887 [Vega]
ICGC DataPortalENSG00000214145
TCGA cBioPortalLINC00887
AceView (NCBI)LINC00887
Genatlas (Paris)LINC00887
WikiGenes100131551
SOURCE (Princeton)LINC00887
Genetics Home Reference (NIH)LINC00887
Genomic and cartography
GoldenPath hg38 (UCSC)LINC00887  -     chr3:194301200-194312804 -  3q29   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)LINC00887  -     3q29   [Description]    (hg19-Feb_2009)
EnsemblLINC00887 - 3q29 [CytoView hg19]  LINC00887 - 3q29 [CytoView hg38]
Mapping of homologs : NCBILINC00887 [Mapview hg19]  LINC00887 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI733313 AK054628 BC112168 BC113537
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)LINC00887
Cluster EST : UnigeneHs.606465 [ NCBI ]
CGAP (NCI)Hs.606465
Alternative Splicing GalleryENSG00000214145
Gene ExpressionLINC00887 [ NCBI-GEO ]   LINC00887 [ EBI - ARRAY_EXPRESS ]   LINC00887 [ SEEK ]   LINC00887 [ MEM ]
Gene Expression Viewer (FireBrowse)LINC00887 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100131551
GTEX Portal (Tissue expression)LINC00887
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)LINC00887
DMDM Disease mutations100131551
Blocks (Seattle)LINC00887
Human Protein AtlasENSG00000214145
IPIIPI00784650   
Protein Interaction databases
FunCoupENSG00000214145
BioGRIDLINC00887
STRING (EMBL)LINC00887
ZODIACLINC00887
Ontologies - Pathways
Huge Navigator LINC00887 [HugePedia]
snp3D : Map Gene to Disease100131551
BioCentury BCIQLINC00887
ClinGenLINC00887
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100131551
Clinical trialLINC00887
Miscellaneous
canSAR (ICR)LINC00887 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineLINC00887
EVEXLINC00887
GoPubMedLINC00887
iHOPLINC00887
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:13:41 CEST 2017

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